PlantSME Plant secondary metabolism enzyme database

Ricinus communis (ricinus_communis)

Imported from atlas release summary for Ricinus communis.

1492
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.42% Alkaloid pathway 23.26% Phenylpropanoid pathway 19.5% Flavonoid pathway 11.53% Rosmarinic acid pathway 9.18% Steroid pathway 7.1%
Family Distribution
C4H 6.25% C3'H/CYP98A 6.05% BAHD 5.73% CYP76 4.03% 4CL 3.86% UGT 3.75% IFS 3.59% POD 3.51%
Other Families 63.23%
More Families (96)
T3O 127 3.48% UFGT 121 3.32% 7DLGT 118 3.23% F3H 99 2.71% DWF4/CYP90B1 90 2.47% F3'H/CYP75B 78 2.14% TRI/TRII 71 1.95% NMT 70 1.92% CODM/T6ODM 66 1.81% STR 60 1.64% BR6OX2/CYP85A2 59 1.62% CYP71 55 1.51% CAS 53 1.45% SMT1/SMT2/SMT3 53 1.45% TPS 52 1.42% CAD 48 1.32% GES 47 1.29% H6H 45 1.23% CYP90D1 39 1.07% CSE 36 0.99% LAC 36 0.99% T16H 35 0.96% COMT 35 0.96% 16OMT 34 0.93% IFR 33 0.9% TAT 33 0.9% HCT 32 0.88% GS 30 0.82% IO 29 0.79% F3'5'H/CYP75A 27 0.74% FNS 25 0.68% SGD 24 0.66% ANR 24 0.66% RAS 24 0.66% F5H/CYP84A 23 0.63% PYKS 22 0.6% BBE 21 0.58% 7DLH 21 0.58% G8O/G8H 21 0.58% PAL 21 0.58% PMT 18 0.49% CCR 18 0.49% NCS 17 0.47% CNMT 17 0.47% BR6OX1/CYP85A1 16 0.44% SLS 15 0.41% CYP51G1 15 0.41% COR 13 0.36% CYP719 12 0.33% CPD/CYP90A1 12 0.33% AACT 12 0.33% 8HGO 11 0.3% LAMT 11 0.3% ANS/LDOX 10 0.27% HPPR 10 0.27% CYP80B1 9 0.25% CCoAOMT 9 0.25% MPO 8 0.22% FPPS 8 0.22% 6OMT_4OMT_SOMT 7 0.19% ISY 7 0.19% DFR 7 0.19% CPR 7 0.19% ROT3/CYP90C1 7 0.19% SQE 7 0.19% GGPPS 7 0.19% ODC 6 0.16% CHS 6 0.16% SQS/FDFT1 6 0.16% MVK 6 0.16% TYDC_DDC 5 0.14% XMT_MXMT_DXMT 4 0.11% DET2 4 0.11% DXS 4 0.11% TDC 3 0.08% CHI 3 0.08% DWF1 3 0.08% HMGR 3 0.08% MVD 3 0.08% MCT/IspD 3 0.08% ADC 2 0.05% FLS 2 0.05% SMO1/SMO2 2 0.05% PMK 2 0.05% CMK/IspE 2 0.05% HMGS 2 0.05% FK 1 0.03% HYD1 1 0.03% CPI1 1 0.03% DWF5 1 0.03% DWF7 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 439 19 BAHD (169) View species results
Alkaloid pathway 347 21 7DLGT (67) View species results
Phenylpropanoid pathway 291 11 POD (120) View species results
Flavonoid pathway 172 11 UFGT (109) View species results
Rosmarinic acid pathway 137 7 C4H (52) View species results
Steroid pathway 106 13 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1417 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 265 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ODC
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Gene Pathway Family Confidence Status Best Target
Rcom299290156230.1 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC
Rcom301700238860.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Rcom301700238870.1 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC
Rcom301700238880.1 Alkaloid ODC medium pass ODC__00004__sp_Q9FPK5_ODC_NICGU
Rcom301700238910.1 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC
Rcom301700238920.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC