PlantSME Plant secondary metabolism enzyme database

Rosa multiflora (rosa_multiflora)

Imported from atlas release summary for Rosa multiflora.

3404
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.41% Alkaloid pathway 22.3% Phenylpropanoid pathway 16.95% Flavonoid pathway 13.92% Rosmarinic acid pathway 9.25% Steroid pathway 7.17%
Family Distribution
C4H 6.6% UGT 5.95% C3'H/CYP98A 5.46% BAHD 5.2% 7DLGT 4.93% UFGT 4.47% CYP76 3.72% 4CL 3.67%
Other Families 60.01%
More Families (98)
IFS 282 3.55% T3O 240 3.02% POD 204 2.57% F3H 203 2.56% BR6OX2/CYP85A2 160 2.02% DWF4/CYP90B1 155 1.95% F3'H/CYP75B 154 1.94% NMT 148 1.86% CAD 142 1.79% H6H 128 1.61% CODM/T6ODM 123 1.55% CAS 122 1.54% STR 107 1.35% LAC 102 1.29% SMT1/SMT2/SMT3 101 1.27% CYP71 95 1.2% TRI/TRII 89 1.12% TPS 87 1.1% GES 84 1.06% GS 84 1.06% HCT 76 0.96% CSE 76 0.96% G8O/G8H 70 0.88% 7DLH 69 0.87% F3'5'H/CYP75A 67 0.84% SLS 66 0.83% CYP90D1 63 0.79% T16H 60 0.76% FNS 59 0.74% TAT 59 0.74% SQE 56 0.71% IO 54 0.68% IFR 53 0.67% SGD 52 0.66% COR 52 0.66% COMT 52 0.66% BR6OX1/CYP85A1 49 0.62% PMT 47 0.59% ANR 47 0.59% RAS 45 0.57% BBE 44 0.55% CCR 42 0.53% F5H/CYP84A 40 0.5% LAMT 39 0.49% DFR 38 0.48% PYKS 37 0.47% NCS 35 0.44% 8HGO 28 0.35% CYP51G1 28 0.35% ANS/LDOX 26 0.33% HMGR 26 0.33% CPD/CYP90A1 25 0.32% 16OMT 22 0.28% CCoAOMT 21 0.26% HPPR 20 0.25% CPR 20 0.25% ISY 18 0.23% ROT3/CYP90C1 18 0.23% CYP80B1 15 0.19% CYP719 15 0.19% CNMT 14 0.18% GGPPS 14 0.18% CHS 13 0.16% MVK 13 0.16% PAL 12 0.15% AACT 12 0.15% MPO 11 0.14% ODC 11 0.14% SQS/FDFT1 9 0.11% FPPS 9 0.11% TYDC_DDC 8 0.1% HDS/IspG 8 0.1% DET2 7 0.09% SMO1/SMO2 7 0.09% MVD 7 0.09% ADC 6 0.08% DXS 6 0.08% XMT_MXMT_DXMT 5 0.06% 6OMT_4OMT_SOMT 4 0.05% CHI 4 0.05% DXR 4 0.05% CMK/IspE 4 0.05% TDC 3 0.04% CYP80F1 3 0.04% DWF7 3 0.04% IDI 3 0.04% MCT/IspD 3 0.04% PMK 3 0.04% HDR/IspH 3 0.04% FLS 2 0.03% DWF1 2 0.03% DWF5 2 0.03% HYD1 2 0.03% GPPS 2 0.03% FK 1 0.01% CPI1 1 0.01% MDS/IspF 1 0.01% HMGS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1035 21 UGT (446) View species results
Alkaloid pathway 759 25 7DLGT (199) View species results
Phenylpropanoid pathway 577 12 POD (177) View species results
Flavonoid pathway 474 14 UFGT (324) View species results
Rosmarinic acid pathway 315 7 C4H (136) View species results
Steroid pathway 244 14 CAS (101) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2980 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 534 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
Reset
Gene Pathway Family Confidence Status Best Target
RmulRmu_co8006694.10003900.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
RmulRmu_sc0004577.10357250.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RmulRmu_sc0004889.10369380.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RmulRmu_sc0009777.10492420.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RmulRmu_sc0011258.10512780.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RmulRmu_sc0019236.10568110.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
RmulRmu_sc0020615.10573810.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
RmulRmu_ssc0000268.10657010.v1.475 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH