Rosa rugosa (rosa_rugosa)
Imported from atlas release summary for Rosa rugosa.
2079
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2079
Candidate Genes
C4H
6.13%
C3'H/CYP98A
6.05%
UGT
5.19%
7DLGT
5.1%
UFGT
5.1%
BAHD
5.0%
IFS
3.95%
T3O
3.56%
Other Families
59.9%
More Families (95)
F3H
168
3.46%
CYP76
164
3.38%
POD
143
2.94%
4CL
123
2.53%
CAD
106
2.18%
DWF4/CYP90B1
102
2.1%
BR6OX2/CYP85A2
102
2.1%
H6H
97
2.0%
CODM/T6ODM
89
1.83%
NMT
87
1.79%
F3'H/CYP75B
87
1.79%
STR
80
1.65%
LAC
77
1.59%
CAS
66
1.36%
SMT1/SMT2/SMT3
60
1.24%
CYP90D1
60
1.24%
CSE
57
1.17%
GES
55
1.13%
TRI/TRII
54
1.11%
GS
53
1.09%
TPS
53
1.09%
7DLH
46
0.95%
CYP71
45
0.93%
HCT
44
0.91%
SLS
40
0.82%
TAT
36
0.74%
ANR
35
0.72%
SGD
34
0.7%
PMT
34
0.7%
COMT
33
0.68%
IO
32
0.66%
F3'5'H/CYP75A
31
0.64%
IFR
31
0.64%
T16H
29
0.6%
RAS
28
0.58%
CCR
27
0.56%
LAMT
26
0.54%
16OMT
24
0.49%
COR
23
0.47%
SQE
23
0.47%
PYKS
22
0.45%
NCS
22
0.45%
FNS
21
0.43%
BR6OX1/CYP85A1
21
0.43%
BBE
20
0.41%
8HGO
19
0.39%
DFR
16
0.33%
F5H/CYP84A
15
0.31%
CNMT
14
0.29%
G8O/G8H
13
0.27%
CCoAOMT
13
0.27%
CYP51G1
13
0.27%
PAL
12
0.25%
HPPR
12
0.25%
ROT3/CYP90C1
12
0.25%
CPD/CYP90A1
11
0.23%
HMGR
11
0.23%
ISY
10
0.21%
ANS/LDOX
10
0.21%
GGPPS
10
0.21%
MPO
9
0.19%
CYP719
8
0.16%
CHS
8
0.16%
CPR
8
0.16%
AACT
7
0.14%
DET2
6
0.12%
FPPS
5
0.1%
TYDC_DDC
4
0.08%
SQS/FDFT1
4
0.08%
MVK
4
0.08%
ODC
3
0.06%
CYP80B1
3
0.06%
6OMT_4OMT_SOMT
3
0.06%
FLS
3
0.06%
SMO1/SMO2
3
0.06%
DXS
3
0.06%
MVD
3
0.06%
DXR
3
0.06%
CMK/IspE
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
HDS/IspG
2
0.04%
MCT/IspD
2
0.04%
TDC
1
0.02%
ADC
1
0.02%
CHI
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 587 | 18 | UGT (243) | View species results |
| Alkaloid pathway | 492 | 21 | 7DLGT (134) | View species results |
| Phenylpropanoid pathway | 398 | 11 | POD (135) | View species results |
| Flavonoid pathway | 293 | 9 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 168 | 7 | C4H (73) | View species results |
| Steroid pathway | 141 | 13 | CAS (61) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1791 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 315 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rrug01G0007250.1 | Alkaloid | PYKS | low | borderline |
| Rrug01G0014410.1 | Alkaloid | PYKS | high | pass |
| Rrug01G0014750.1 | Alkaloid | PYKS | high | pass |
| Rrug01G0035530.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0007230.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0010480.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0012630.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0038090.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0046140.1 | Alkaloid | PYKS | low | borderline |
| Rrug02G0059380.1 | Alkaloid | PYKS | high | pass |
| Rrug03G0002370.1 | Alkaloid | PYKS | high | pass |
| Rrug03G0002380.1 | Alkaloid | PYKS | high | pass |
| Rrug03G0002420.1 | Alkaloid | PYKS | high | pass |
| Rrug03G0021710.1 | Alkaloid | PYKS | high | pass |
| Rrug03G0033530.1 | Alkaloid | PYKS | low | borderline |
| Rrug03G0037260.1 | Alkaloid | PYKS | low | borderline |
| Rrug03G0037270.1 | Alkaloid | PYKS | low | borderline |
| Rrug05G0012800.1 | Alkaloid | PYKS | high | pass |
| Rrug05G0016870.1 | Alkaloid | PYKS | low | borderline |
| Rrug05G0020630.1 | Alkaloid | PYKS | low | borderline |
| Rrug06G0004620.1 | Alkaloid | PYKS | low | borderline |
| Rrug07G0020950.1 | Alkaloid | PYKS | low | borderline |