Rosa rugosa (rosa_rugosa)
Imported from atlas release summary for Rosa rugosa.
2225
Candidate Protein Records
2079
Pathway-Level Records
4858
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4858
Family-Level Calls
C4H
6.13%
C3'H/CYP98A
6.05%
UGT
5.19%
7DLGT
5.1%
UFGT
5.1%
BAHD
5.0%
IFS
3.95%
T3O
3.56%
Other Families
59.9%
More Families (95)
F3H
168
3.46%
CYP76
164
3.38%
POD
143
2.94%
4CL
123
2.53%
CAD
106
2.18%
DWF4/CYP90B1
102
2.1%
BR6OX2/CYP85A2
102
2.1%
H6H
97
2.0%
CODM/T6ODM
89
1.83%
NMT
87
1.79%
F3'H/CYP75B
87
1.79%
STR
80
1.65%
LAC
77
1.59%
CAS
66
1.36%
SMT1/SMT2/SMT3
60
1.24%
CYP90D1
60
1.24%
CSE
57
1.17%
GES
55
1.13%
TRI/TRII
54
1.11%
GS
53
1.09%
TPS
53
1.09%
7DLH
46
0.95%
CYP71
45
0.93%
HCT
44
0.91%
SLS
40
0.82%
TAT
36
0.74%
ANR
35
0.72%
SGD
34
0.7%
PMT
34
0.7%
COMT
33
0.68%
IO
32
0.66%
F3'5'H/CYP75A
31
0.64%
IFR
31
0.64%
T16H
29
0.6%
RAS
28
0.58%
CCR
27
0.56%
LAMT
26
0.54%
16OMT
24
0.49%
COR
23
0.47%
SQE
23
0.47%
PYKS
22
0.45%
NCS
22
0.45%
FNS
21
0.43%
BR6OX1/CYP85A1
21
0.43%
BBE
20
0.41%
8HGO
19
0.39%
DFR
16
0.33%
F5H/CYP84A
15
0.31%
CNMT
14
0.29%
G8O/G8H
13
0.27%
CCoAOMT
13
0.27%
CYP51G1
13
0.27%
PAL
12
0.25%
HPPR
12
0.25%
ROT3/CYP90C1
12
0.25%
CPD/CYP90A1
11
0.23%
HMGR
11
0.23%
ISY
10
0.21%
ANS/LDOX
10
0.21%
GGPPS
10
0.21%
MPO
9
0.19%
CYP719
8
0.16%
CHS
8
0.16%
CPR
8
0.16%
AACT
7
0.14%
DET2
6
0.12%
FPPS
5
0.1%
TYDC_DDC
4
0.08%
SQS/FDFT1
4
0.08%
MVK
4
0.08%
ODC
3
0.06%
CYP80B1
3
0.06%
6OMT_4OMT_SOMT
3
0.06%
FLS
3
0.06%
SMO1/SMO2
3
0.06%
DXS
3
0.06%
MVD
3
0.06%
DXR
3
0.06%
CMK/IspE
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
HDS/IspG
2
0.04%
MCT/IspD
2
0.04%
TDC
1
0.02%
ADC
1
0.02%
CHI
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 587 | 18 | UGT (243) | View species results |
| Alkaloid pathway | 492 | 21 | 7DLGT (134) | View species results |
| Phenylpropanoid pathway | 398 | 11 | POD (135) | View species results |
| Flavonoid pathway | 293 | 9 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 168 | 7 | C4H (73) | View species results |
| Steroid pathway | 141 | 13 | CAS (61) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1791 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 315 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rrug02G0035700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug02G0043300.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rrug03G0003800.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rrug03G0003810.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rrug03G0014440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug03G0035180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug03G0037100.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug03G0047600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0001600.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Rrug04G0007620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0009000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0015830.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rrug04G0016600.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0018280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0020870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0025050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0029720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0029890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug04G0036750.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Rrug04G0037750.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0005540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0011150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0024660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0027740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0028470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0029760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0029790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0045080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0048550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0058100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug05G0058340.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0004840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0010220.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rrug06G0012130.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Rrug06G0012140.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Rrug06G0025750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0025770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0025790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0025840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0032610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0035890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0040720.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0043060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0043430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rrug06G0043440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |