Rubus chingii (rubus_chingii)
Imported from atlas release summary for Rubus chingii.
1814
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1814
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.72%
UGT
5.14%
BAHD
4.83%
IFS
4.66%
7DLGT
4.2%
UFGT
4.06%
CYP76
3.47%
Other Families
60.03%
More Families (95)
T3O
150
3.29%
POD
129
2.83%
F3H
126
2.77%
4CL
120
2.64%
DWF4/CYP90B1
115
2.53%
BR6OX2/CYP85A2
106
2.33%
7DLH
102
2.24%
F3'H/CYP75B
102
2.24%
CAD
101
2.22%
NMT
84
1.84%
CODM/T6ODM
80
1.76%
CAS
72
1.58%
CSE
70
1.54%
H6H
68
1.49%
TPS
68
1.49%
STR
60
1.32%
GES
59
1.3%
CYP90D1
58
1.27%
SMT1/SMT2/SMT3
56
1.23%
LAC
51
1.12%
CYP71
47
1.03%
HCT
46
1.01%
GS
45
0.99%
SLS
42
0.92%
TRI/TRII
36
0.79%
RAS
36
0.79%
PMT
34
0.75%
SGD
34
0.75%
IO
31
0.68%
COMT
30
0.66%
T16H
27
0.59%
IFR
27
0.59%
ANR
25
0.55%
TAT
24
0.53%
CCR
22
0.48%
F3'5'H/CYP75A
21
0.46%
BBE
20
0.44%
PYKS
20
0.44%
F5H/CYP84A
18
0.4%
CPD/CYP90A1
18
0.4%
LAMT
17
0.37%
BR6OX1/CYP85A1
17
0.37%
CYP51G1
17
0.37%
G8O/G8H
16
0.35%
16OMT
16
0.35%
SQE
16
0.35%
NCS
15
0.33%
FNS
15
0.33%
ROT3/CYP90C1
15
0.33%
COR
13
0.29%
CNMT
12
0.26%
DFR
12
0.26%
CCoAOMT
11
0.24%
8HGO
9
0.2%
CYP719
8
0.18%
MPO
8
0.18%
HPPR
8
0.18%
TYDC_DDC
7
0.15%
GGPPS
7
0.15%
HMGR
7
0.15%
MVD
7
0.15%
ISY
6
0.13%
CYP80B1
6
0.13%
ANS/LDOX
6
0.13%
PAL
6
0.13%
SQS/FDFT1
6
0.13%
CHS
5
0.11%
SMO1/SMO2
5
0.11%
CMK/IspE
5
0.11%
DXS
5
0.11%
FPPS
5
0.11%
AACT
5
0.11%
CPR
4
0.09%
DET2
4
0.09%
ODC
3
0.07%
TDC
3
0.07%
DWF7
3
0.07%
MVK
3
0.07%
FLS
2
0.04%
CHI
2
0.04%
DWF5
2
0.04%
ADC
1
0.02%
CYP80F1
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HDR/IspH
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 545 | 18 | UGT (223) | View species results |
| Alkaloid pathway | 412 | 22 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 345 | 11 | POD (117) | View species results |
| Flavonoid pathway | 231 | 9 | UFGT (176) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (78) | View species results |
| Steroid pathway | 127 | 11 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1907 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| RUchi01G0008630.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0008640.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009310.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009330.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009360.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009770.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| RUchi01G0009780.1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| RUchi01G0026550.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0027250.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0027280.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi02G0003700.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| RUchi02G0012790.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| RUchi02G0027590.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi02G0039420.1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| RUchi03G0009990.1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| RUchi03G0041630.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| RUchi03G0041640.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| RUchi04G0011640.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| RUchi04G0012300.1 | Flavonoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| RUchi04G0015800.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi04G0019670.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| RUchi04G0022670.1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| RUchi04G0022680.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| RUchi04G0030730.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| RUchi04G0034130.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| RUchi04G0034140.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| RUchi05G0008810.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| RUchi05G0011330.1 | Flavonoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| RUchi05G0013540.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| RUchi05G0021340.1 | Flavonoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| RUchi06G0011770.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| RUchi06G0011780.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| RUchi06G0020490.1 | Flavonoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| RUchi06G0025440.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| RUchi06G0025450.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| RUchi06G0040750.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| RUchi06G0050430.1 | Flavonoid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| RUchi07G0000480.1 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| RUchi07G0027800.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| RUchi07G0028650.1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| RUchi01G0008630.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0008640.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009310.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009330.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009360.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0009770.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| RUchi01G0009780.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| RUchi01G0026550.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0027250.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| RUchi01G0027280.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |