Rubus chingii (rubus_chingii)
Imported from atlas release summary for Rubus chingii.
1814
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1814
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.72%
UGT
5.14%
BAHD
4.83%
IFS
4.66%
7DLGT
4.2%
UFGT
4.06%
CYP76
3.47%
Other Families
60.03%
More Families (95)
T3O
150
3.29%
POD
129
2.83%
F3H
126
2.77%
4CL
120
2.64%
DWF4/CYP90B1
115
2.53%
BR6OX2/CYP85A2
106
2.33%
7DLH
102
2.24%
F3'H/CYP75B
102
2.24%
CAD
101
2.22%
NMT
84
1.84%
CODM/T6ODM
80
1.76%
CAS
72
1.58%
CSE
70
1.54%
H6H
68
1.49%
TPS
68
1.49%
STR
60
1.32%
GES
59
1.3%
CYP90D1
58
1.27%
SMT1/SMT2/SMT3
56
1.23%
LAC
51
1.12%
CYP71
47
1.03%
HCT
46
1.01%
GS
45
0.99%
SLS
42
0.92%
TRI/TRII
36
0.79%
RAS
36
0.79%
PMT
34
0.75%
SGD
34
0.75%
IO
31
0.68%
COMT
30
0.66%
T16H
27
0.59%
IFR
27
0.59%
ANR
25
0.55%
TAT
24
0.53%
CCR
22
0.48%
F3'5'H/CYP75A
21
0.46%
BBE
20
0.44%
PYKS
20
0.44%
F5H/CYP84A
18
0.4%
CPD/CYP90A1
18
0.4%
LAMT
17
0.37%
BR6OX1/CYP85A1
17
0.37%
CYP51G1
17
0.37%
G8O/G8H
16
0.35%
16OMT
16
0.35%
SQE
16
0.35%
NCS
15
0.33%
FNS
15
0.33%
ROT3/CYP90C1
15
0.33%
COR
13
0.29%
CNMT
12
0.26%
DFR
12
0.26%
CCoAOMT
11
0.24%
8HGO
9
0.2%
CYP719
8
0.18%
MPO
8
0.18%
HPPR
8
0.18%
TYDC_DDC
7
0.15%
GGPPS
7
0.15%
HMGR
7
0.15%
MVD
7
0.15%
ISY
6
0.13%
CYP80B1
6
0.13%
ANS/LDOX
6
0.13%
PAL
6
0.13%
SQS/FDFT1
6
0.13%
CHS
5
0.11%
SMO1/SMO2
5
0.11%
CMK/IspE
5
0.11%
DXS
5
0.11%
FPPS
5
0.11%
AACT
5
0.11%
CPR
4
0.09%
DET2
4
0.09%
ODC
3
0.07%
TDC
3
0.07%
DWF7
3
0.07%
MVK
3
0.07%
FLS
2
0.04%
CHI
2
0.04%
DWF5
2
0.04%
ADC
1
0.02%
CYP80F1
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HDR/IspH
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 545 | 18 | UGT (223) | View species results |
| Alkaloid pathway | 412 | 22 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 345 | 11 | POD (117) | View species results |
| Flavonoid pathway | 231 | 9 | UFGT (176) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (78) | View species results |
| Steroid pathway | 127 | 11 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1907 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| RUchi01G0013390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi01G0018030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi01G0019500.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi01G0027260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi01G0027270.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| RUchi01G0028630.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi01G0032400.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0003980.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0010380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0010390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0018900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0026080.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0030020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi02G0035770.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi03G0019300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0021600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0021610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0030630.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi03G0033740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0034090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0036130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0036200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0036250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0038580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0038620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0038640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0038650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0047070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi03G0050590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi04G0004580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi04G0007770.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi04G0007780.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| RUchi04G0007990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi04G0014280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi04G0014300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi05G0000960.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi05G0000970.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi05G0015290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi05G0027570.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi06G0004300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0012900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0012910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0012920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0019910.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0021660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0021670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0029910.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| RUchi06G0031940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0031960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| RUchi06G0032020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |