PlantSME Plant secondary metabolism enzyme database

Rubus chingii (rubus_chingii)

Imported from atlas release summary for Rubus chingii.

1814
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.04% Alkaloid pathway 22.71% Phenylpropanoid pathway 19.02% Flavonoid pathway 12.73% Rosmarinic acid pathway 8.49% Steroid pathway 7.0%
Family Distribution
C4H 6.9% C3'H/CYP98A 6.72% UGT 5.14% BAHD 4.83% IFS 4.66% 7DLGT 4.2% UFGT 4.06% CYP76 3.47%
Other Families 60.03%
More Families (95)
T3O 150 3.29% POD 129 2.83% F3H 126 2.77% 4CL 120 2.64% DWF4/CYP90B1 115 2.53% BR6OX2/CYP85A2 106 2.33% 7DLH 102 2.24% F3'H/CYP75B 102 2.24% CAD 101 2.22% NMT 84 1.84% CODM/T6ODM 80 1.76% CAS 72 1.58% CSE 70 1.54% H6H 68 1.49% TPS 68 1.49% STR 60 1.32% GES 59 1.3% CYP90D1 58 1.27% SMT1/SMT2/SMT3 56 1.23% LAC 51 1.12% CYP71 47 1.03% HCT 46 1.01% GS 45 0.99% SLS 42 0.92% TRI/TRII 36 0.79% RAS 36 0.79% PMT 34 0.75% SGD 34 0.75% IO 31 0.68% COMT 30 0.66% T16H 27 0.59% IFR 27 0.59% ANR 25 0.55% TAT 24 0.53% CCR 22 0.48% F3'5'H/CYP75A 21 0.46% BBE 20 0.44% PYKS 20 0.44% F5H/CYP84A 18 0.4% CPD/CYP90A1 18 0.4% LAMT 17 0.37% BR6OX1/CYP85A1 17 0.37% CYP51G1 17 0.37% G8O/G8H 16 0.35% 16OMT 16 0.35% SQE 16 0.35% NCS 15 0.33% FNS 15 0.33% ROT3/CYP90C1 15 0.33% COR 13 0.29% CNMT 12 0.26% DFR 12 0.26% CCoAOMT 11 0.24% 8HGO 9 0.2% CYP719 8 0.18% MPO 8 0.18% HPPR 8 0.18% TYDC_DDC 7 0.15% GGPPS 7 0.15% HMGR 7 0.15% MVD 7 0.15% ISY 6 0.13% CYP80B1 6 0.13% ANS/LDOX 6 0.13% PAL 6 0.13% SQS/FDFT1 6 0.13% CHS 5 0.11% SMO1/SMO2 5 0.11% CMK/IspE 5 0.11% DXS 5 0.11% FPPS 5 0.11% AACT 5 0.11% CPR 4 0.09% DET2 4 0.09% ODC 3 0.07% TDC 3 0.07% DWF7 3 0.07% MVK 3 0.07% FLS 2 0.04% CHI 2 0.04% DWF5 2 0.04% ADC 1 0.02% CYP80F1 1 0.02% DWF1 1 0.02% HYD1 1 0.02% CPI1 1 0.02% FK 1 0.02% HDR/IspH 1 0.02% MCT/IspD 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02% PMK 1 0.02% IDI 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 545 18 UGT (223) View species results
Alkaloid pathway 412 22 7DLGT (112) View species results
Phenylpropanoid pathway 345 11 POD (117) View species results
Flavonoid pathway 231 9 UFGT (176) View species results
Rosmarinic acid pathway 154 7 C4H (78) View species results
Steroid pathway 127 11 CAS (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1907 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 302 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
RUchi02G0035730.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi04G0000960.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi04G0001420.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi04G0001430.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi04G0010300.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi04G0010310.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi06G0044080.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi06G0044090.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
RUchi06G0044100.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
RUchi06G0044110.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
RUchi06G0044120.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
RUchi06G0044140.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
RUchi07G0005770.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO