Rubus chingii (rubus_chingii)
Imported from atlas release summary for Rubus chingii.
2032
Candidate Protein Records
1814
Pathway-Level Records
4553
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4553
Family-Level Calls
C4H
6.9%
C3'H/CYP98A
6.72%
UGT
5.14%
BAHD
4.83%
IFS
4.66%
7DLGT
4.2%
UFGT
4.06%
CYP76
3.47%
Other Families
60.03%
More Families (95)
T3O
150
3.29%
POD
129
2.83%
F3H
126
2.77%
4CL
120
2.64%
DWF4/CYP90B1
115
2.53%
BR6OX2/CYP85A2
106
2.33%
7DLH
102
2.24%
F3'H/CYP75B
102
2.24%
CAD
101
2.22%
NMT
84
1.84%
CODM/T6ODM
80
1.76%
CAS
72
1.58%
CSE
70
1.54%
H6H
68
1.49%
TPS
68
1.49%
STR
60
1.32%
GES
59
1.3%
CYP90D1
58
1.27%
SMT1/SMT2/SMT3
56
1.23%
LAC
51
1.12%
CYP71
47
1.03%
HCT
46
1.01%
GS
45
0.99%
SLS
42
0.92%
TRI/TRII
36
0.79%
RAS
36
0.79%
PMT
34
0.75%
SGD
34
0.75%
IO
31
0.68%
COMT
30
0.66%
T16H
27
0.59%
IFR
27
0.59%
ANR
25
0.55%
TAT
24
0.53%
CCR
22
0.48%
F3'5'H/CYP75A
21
0.46%
BBE
20
0.44%
PYKS
20
0.44%
F5H/CYP84A
18
0.4%
CPD/CYP90A1
18
0.4%
LAMT
17
0.37%
BR6OX1/CYP85A1
17
0.37%
CYP51G1
17
0.37%
G8O/G8H
16
0.35%
16OMT
16
0.35%
SQE
16
0.35%
NCS
15
0.33%
FNS
15
0.33%
ROT3/CYP90C1
15
0.33%
COR
13
0.29%
CNMT
12
0.26%
DFR
12
0.26%
CCoAOMT
11
0.24%
8HGO
9
0.2%
CYP719
8
0.18%
MPO
8
0.18%
HPPR
8
0.18%
TYDC_DDC
7
0.15%
GGPPS
7
0.15%
HMGR
7
0.15%
MVD
7
0.15%
ISY
6
0.13%
CYP80B1
6
0.13%
ANS/LDOX
6
0.13%
PAL
6
0.13%
SQS/FDFT1
6
0.13%
CHS
5
0.11%
SMO1/SMO2
5
0.11%
CMK/IspE
5
0.11%
DXS
5
0.11%
FPPS
5
0.11%
AACT
5
0.11%
CPR
4
0.09%
DET2
4
0.09%
ODC
3
0.07%
TDC
3
0.07%
DWF7
3
0.07%
MVK
3
0.07%
FLS
2
0.04%
CHI
2
0.04%
DWF5
2
0.04%
ADC
1
0.02%
CYP80F1
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HDR/IspH
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
PMK
1
0.02%
IDI
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 545 | 18 | UGT (223) | View species results |
| Alkaloid pathway | 412 | 22 | 7DLGT (112) | View species results |
| Phenylpropanoid pathway | 345 | 11 | POD (117) | View species results |
| Flavonoid pathway | 231 | 9 | UFGT (176) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (78) | View species results |
| Steroid pathway | 127 | 11 | CAS (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1907 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 302 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| RUchi04G0042770.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi04G0042800.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi04G0042810.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi04G0042830.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi04G0042850.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi04G0042860.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi05G0014590.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi05G0017120.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi05G0017530.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi05G0017540.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi05G0017550.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi05G0017560.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi05G0030810.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi05G0030820.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0010410.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi06G0013030.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi06G0021630.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0025160.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0038050.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0038060.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi06G0043720.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0043730.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0043750.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0043780.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi06G0045590.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi07G0004710.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi07G0006290.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi07G0008290.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| RUchi07G0029300.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi07G0033650.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi07G0036150.1 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| RUchi02G0035730.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi04G0000960.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi04G0001420.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi04G0001430.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi04G0010300.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi04G0010310.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi06G0044080.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi06G0044090.1 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| RUchi06G0044100.1 | Alkaloid | COR | medium | pass | COR__00003__sp_Q9SQ68_COR13_PAPSO |
| RUchi06G0044110.1 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| RUchi06G0044120.1 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| RUchi06G0044140.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| RUchi07G0005770.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| RUchi02G0006650.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| RUchi02G0008900.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00005__sp_B5UAQ8_C7195_ESCCA |
| RUchi02G0023170.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| RUchi02G0023180.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| RUchi02G0023190.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| RUchi03G0038850.1 | Alkaloid | CYP719 | medium | borderline | CYP719__00010__sp_Q50LH4_C7193_ESCCA |