PlantSME Plant secondary metabolism enzyme database

Salix brachista (salix_brachista)

Imported from atlas release summary for Salix brachista.

1464
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.6% Alkaloid pathway 23.63% Phenylpropanoid pathway 19.6% Flavonoid pathway 11.82% Rosmarinic acid pathway 7.45% Steroid pathway 6.9%
Family Distribution
C4H 7.21% BAHD 6.54% UGT 4.82% C3'H/CYP98A 4.3% 7DLGT 3.96% 4CL 3.58% POD 3.46% F3H 3.35%
Other Families 62.78%
More Families (97)
IFS 115 3.19% CYP76 111 3.08% UFGT 104 2.88% T3O 92 2.55% NMT 80 2.22% STR 72 2.0% F3'H/CYP75B 66 1.83% CAD 64 1.77% H6H 63 1.75% CODM/T6ODM 61 1.69% TRI/TRII 53 1.47% LAC 53 1.47% CAS 53 1.47% G8O/G8H 50 1.39% BR6OX2/CYP85A2 50 1.39% DWF4/CYP90B1 50 1.39% HCT 48 1.33% T16H 42 1.16% SMT1/SMT2/SMT3 42 1.16% IFR 41 1.14% FNS 40 1.11% TAT 40 1.11% CYP71 40 1.11% PYKS 37 1.03% GS 35 0.97% RAS 34 0.94% SGD 32 0.89% CYP90D1 31 0.86% COMT 30 0.83% CCR 28 0.78% TPS 28 0.78% GES 27 0.75% CSE 27 0.75% SLS 25 0.69% PMT 24 0.67% 8HGO 24 0.67% F3'5'H/CYP75A 24 0.67% IO 23 0.64% NCS 23 0.64% F5H/CYP84A 23 0.64% 16OMT 20 0.55% ANR 20 0.55% LAMT 19 0.53% DFR 19 0.53% PAL 18 0.5% CPD/CYP90A1 14 0.39% ISY 12 0.33% BR6OX1/CYP85A1 12 0.33% AACT 12 0.33% 7DLH 11 0.3% SQS/FDFT1 11 0.3% CHS 10 0.28% MPO 9 0.25% CYP80B1 9 0.25% ANS/LDOX 9 0.25% COR 8 0.22% SQE 8 0.22% CPR 7 0.19% DET2 7 0.19% HMGR 7 0.19% GGPPS 7 0.19% CHI 6 0.17% CCoAOMT 6 0.17% CYP51G1 6 0.17% ROT3/CYP90C1 6 0.17% MVK 6 0.17% CNMT 5 0.14% HPPR 5 0.14% SMO1/SMO2 5 0.14% FPPS 5 0.14% DXS 5 0.14% MVD 5 0.14% TDC 4 0.11% CYP719 4 0.11% XMT_MXMT_DXMT 4 0.11% DWF1 4 0.11% PMK 3 0.08% MCT/IspD 3 0.08% CYP80F1 2 0.06% ODC 2 0.06% TYDC_DDC 2 0.06% HYD1 2 0.06% DWF7 2 0.06% MDS/IspF 2 0.06% HMGS 2 0.06% HDS/IspG 2 0.06% CMK/IspE 2 0.06% DXR 2 0.06% ADC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% BBE 1 0.03% FLS 1 0.03% FK 1 0.03% DWF5 1 0.03% CPI1 1 0.03% HDR/IspH 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 448 19 BAHD (172) View species results
Alkaloid pathway 346 23 7DLGT (67) View species results
Phenylpropanoid pathway 287 12 POD (106) View species results
Flavonoid pathway 173 11 UFGT (90) View species results
Rosmarinic acid pathway 109 7 4CL (31) View species results
Steroid pathway 101 12 CAS (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1221 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 318 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGS
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Gene Pathway Family Confidence Status Best Target
Sbra01G0007330.1 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH
Sbra03G0005890.1 Terpenoid HMGS high pass HMGS__00001__sp_P54873_HMCS_ARATH