Salix brachista (salix_brachista)
Imported from atlas release summary for Salix brachista.
1464
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1464
Candidate Genes
C4H
7.21%
BAHD
6.54%
UGT
4.82%
C3'H/CYP98A
4.3%
7DLGT
3.96%
4CL
3.58%
POD
3.46%
F3H
3.35%
Other Families
62.78%
More Families (97)
IFS
115
3.19%
CYP76
111
3.08%
UFGT
104
2.88%
T3O
92
2.55%
NMT
80
2.22%
STR
72
2.0%
F3'H/CYP75B
66
1.83%
CAD
64
1.77%
H6H
63
1.75%
CODM/T6ODM
61
1.69%
TRI/TRII
53
1.47%
LAC
53
1.47%
CAS
53
1.47%
G8O/G8H
50
1.39%
BR6OX2/CYP85A2
50
1.39%
DWF4/CYP90B1
50
1.39%
HCT
48
1.33%
T16H
42
1.16%
SMT1/SMT2/SMT3
42
1.16%
IFR
41
1.14%
FNS
40
1.11%
TAT
40
1.11%
CYP71
40
1.11%
PYKS
37
1.03%
GS
35
0.97%
RAS
34
0.94%
SGD
32
0.89%
CYP90D1
31
0.86%
COMT
30
0.83%
CCR
28
0.78%
TPS
28
0.78%
GES
27
0.75%
CSE
27
0.75%
SLS
25
0.69%
PMT
24
0.67%
8HGO
24
0.67%
F3'5'H/CYP75A
24
0.67%
IO
23
0.64%
NCS
23
0.64%
F5H/CYP84A
23
0.64%
16OMT
20
0.55%
ANR
20
0.55%
LAMT
19
0.53%
DFR
19
0.53%
PAL
18
0.5%
CPD/CYP90A1
14
0.39%
ISY
12
0.33%
BR6OX1/CYP85A1
12
0.33%
AACT
12
0.33%
7DLH
11
0.3%
SQS/FDFT1
11
0.3%
CHS
10
0.28%
MPO
9
0.25%
CYP80B1
9
0.25%
ANS/LDOX
9
0.25%
COR
8
0.22%
SQE
8
0.22%
CPR
7
0.19%
DET2
7
0.19%
HMGR
7
0.19%
GGPPS
7
0.19%
CHI
6
0.17%
CCoAOMT
6
0.17%
CYP51G1
6
0.17%
ROT3/CYP90C1
6
0.17%
MVK
6
0.17%
CNMT
5
0.14%
HPPR
5
0.14%
SMO1/SMO2
5
0.14%
FPPS
5
0.14%
DXS
5
0.14%
MVD
5
0.14%
TDC
4
0.11%
CYP719
4
0.11%
XMT_MXMT_DXMT
4
0.11%
DWF1
4
0.11%
PMK
3
0.08%
MCT/IspD
3
0.08%
CYP80F1
2
0.06%
ODC
2
0.06%
TYDC_DDC
2
0.06%
HYD1
2
0.06%
DWF7
2
0.06%
MDS/IspF
2
0.06%
HMGS
2
0.06%
HDS/IspG
2
0.06%
CMK/IspE
2
0.06%
DXR
2
0.06%
ADC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
BBE
1
0.03%
FLS
1
0.03%
FK
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
HDR/IspH
1
0.03%
IDI
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 448 | 19 | BAHD (172) | View species results |
| Alkaloid pathway | 346 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 287 | 12 | POD (106) | View species results |
| Flavonoid pathway | 173 | 11 | UFGT (90) | View species results |
| Rosmarinic acid pathway | 109 | 7 | 4CL (31) | View species results |
| Steroid pathway | 101 | 12 | CAS (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1221 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 318 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sbra03G0003440.1 | Alkaloid | NCS | medium | pass | NCS__00004__sp_Q4QTJ2_NCS1_PAPSO |
| Sbra03G0013740.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra04G0013210.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra04G0014240.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra04G0014300.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra05G0009490.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra08G0011150.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra08G0011160.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra10G0013340.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013350.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013360.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013370.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013380.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013870.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013880.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013890.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013900.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra10G0013910.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Sbra11G0004770.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra11G0005980.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra13G0009180.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra16G0021150.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Sbra17G0005580.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |