PlantSME Plant secondary metabolism enzyme database

Scapania (scapania)

Imported from atlas release summary for Scapania.

718
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.51% Terpenoid pathway 23.68% Alkaloid pathway 22.7% Flavonoid pathway 11.42% Rosmarinic acid pathway 10.86% Steroid pathway 6.82%
Family Distribution
C4H 7.18% C3'H/CYP98A 6.05% 4CL 5.07% CYP76 4.83% BAHD 4.55% NMT 3.61% STR 3.38% IFS 3.28%
Other Families 62.05%
More Families (97)
POD 69 3.24% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 57 2.67% H6H 45 2.11% GS 41 1.92% IFR 40 1.88% F3'H/CYP75B 36 1.69% DWF4/CYP90B1 35 1.64% UGT 34 1.59% TRI/TRII 33 1.55% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.27% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 23 1.08% CODM/T6ODM 22 1.03% F3'5'H/CYP75A 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% ANS/LDOX 9 0.42% GES 8 0.38% CYP719 8 0.38% SLS 8 0.38% DFR 8 0.38% CYP90D1 8 0.38% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 176 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 82 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
Scapania2090060013190 Flavonoid IFR low borderline
Scapania2195730016910 Flavonoid IFR low borderline
Scapania2287530024510 Flavonoid IFR low borderline
Scapania2353370041250 Flavonoid IFR low borderline
Scapania2364750047280 Flavonoid IFR low borderline
Scapania2365180047650 Flavonoid IFR low borderline
Scapania2368060049020 Flavonoid IFR low borderline
Scapania2371260051530 Flavonoid IFR low borderline
Scapania2376180055270 Flavonoid IFR low borderline
Scapania2383000061210 Flavonoid IFR low borderline
Scapania2389740068770 Flavonoid IFR low borderline
Scapania2392580073120 Flavonoid IFR high pass
Scapania2398630081870 Flavonoid IFR high pass
Scapania2400440083960 Flavonoid IFR low borderline
Scapania2406060092820 Flavonoid IFR medium pass
Scapania2406250093140 Flavonoid IFR low borderline
Scapania2413480105130 Flavonoid IFR high pass
Scapania2422570123380 Flavonoid IFR low borderline
Scapania2429910144000 Flavonoid IFR low borderline
Scapania2431080147810 Flavonoid IFR low borderline
Scapania2437870167900 Flavonoid IFR low borderline
Scapania2442340183990 Flavonoid IFR medium pass
Scapania2450550218250 Flavonoid IFR low borderline
Scapania2452290227860 Flavonoid IFR high pass
Scapania2453210232390 Flavonoid IFR medium pass
Scapania2453210232400 Flavonoid IFR medium pass
Scapania2453270232800 Flavonoid IFR low borderline
Scapania2454920240030 Flavonoid IFR low borderline
Scapania2457210249500 Flavonoid IFR medium pass
Scapania2457580252040 Flavonoid IFR low borderline
Scapania2458000254440 Flavonoid IFR low borderline
Scapania2461860276380 Flavonoid IFR low borderline
Scapania2472620333460 Flavonoid IFR low borderline
Scapania2475490344930 Flavonoid IFR low borderline
Scapania2476620347590 Flavonoid IFR high pass
Scapania2477700351740 Flavonoid IFR low borderline
Scapania2478790355090 Flavonoid IFR low borderline
Scapania2487010370530 Flavonoid IFR low borderline
Scapania2924390387770 Flavonoid IFR low borderline
Scapania2924420387780 Flavonoid IFR low borderline