Scapania (scapania)
Imported from atlas release summary for Scapania.
718
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
718
Candidate Genes
C4H
7.18%
C3'H/CYP98A
6.05%
4CL
5.07%
CYP76
4.83%
BAHD
4.55%
NMT
3.61%
STR
3.38%
IFS
3.28%
Other Families
62.05%
More Families (97)
POD
69
3.24%
T3O
63
2.95%
BR6OX2/CYP85A2
61
2.86%
F3H
57
2.67%
H6H
45
2.11%
GS
41
1.92%
IFR
40
1.88%
F3'H/CYP75B
36
1.69%
DWF4/CYP90B1
35
1.64%
UGT
34
1.59%
TRI/TRII
33
1.55%
IO
31
1.45%
7DLGT
31
1.45%
UFGT
31
1.45%
COMT
28
1.31%
PAL
27
1.27%
RAS
26
1.22%
CAD
25
1.17%
HCT
25
1.17%
FNS
23
1.08%
CODM/T6ODM
22
1.03%
F3'5'H/CYP75A
22
1.03%
CSE
22
1.03%
TPS
21
0.98%
G8O/G8H
20
0.94%
T16H
20
0.94%
SMT1/SMT2/SMT3
19
0.89%
CAS
18
0.84%
CYP71
18
0.84%
SGD
17
0.8%
CNMT
16
0.75%
PYKS
16
0.75%
CPD/CYP90A1
14
0.66%
BR6OX1/CYP85A1
13
0.61%
LAC
12
0.56%
CHS
11
0.52%
MVD
11
0.52%
ANR
10
0.47%
ROT3/CYP90C1
10
0.47%
PMT
9
0.42%
LAMT
9
0.42%
NCS
9
0.42%
ANS/LDOX
9
0.42%
GES
8
0.38%
CYP719
8
0.38%
SLS
8
0.38%
DFR
8
0.38%
CYP90D1
8
0.38%
COR
7
0.33%
CCR
7
0.33%
CPR
7
0.33%
HPPR
7
0.33%
8HGO
6
0.28%
CYP80B1
6
0.28%
AACT
6
0.28%
TDC
5
0.23%
16OMT
5
0.23%
ADC
5
0.23%
CHI
5
0.23%
TAT
5
0.23%
CYP51G1
5
0.23%
DWF7
5
0.23%
DET2
5
0.23%
MCT/IspD
5
0.23%
FPPS
5
0.23%
MVK
5
0.23%
GGPPS
5
0.23%
ISY
4
0.19%
F5H/CYP84A
4
0.19%
SQS/FDFT1
4
0.19%
DXS
4
0.19%
IDI
4
0.19%
7DLH
3
0.14%
BBE
3
0.14%
MPO
3
0.14%
ODC
3
0.14%
FLS
3
0.14%
SMO1/SMO2
3
0.14%
DXR
3
0.14%
CMK/IspE
3
0.14%
TYDC_DDC
2
0.09%
FK
2
0.09%
SQE
2
0.09%
HYD1
2
0.09%
DWF1
2
0.09%
GPPS
2
0.09%
HMGS
2
0.09%
XMT_MXMT_DXMT
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
CCoAOMT
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
HMGR
1
0.05%
HDR/IspH
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 176 | 11 | POD (56) | View species results |
| Terpenoid pathway | 170 | 19 | BAHD (54) | View species results |
| Alkaloid pathway | 163 | 19 | NMT (28) | View species results |
| Flavonoid pathway | 82 | 10 | UFGT (27) | View species results |
| Rosmarinic acid pathway | 78 | 7 | C4H (31) | View species results |
| Steroid pathway | 49 | 13 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 840 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 148 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Scapania2384730062970 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2387560065960 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2387560065980 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2399330082690 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2419330116810 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2437550167010 | Flavonoid | PAL | medium | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2437550167020 | Flavonoid | PAL | medium | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2447110203060 | Flavonoid | PAL | high | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2460850270530 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2384730062970 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2387560065960 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2387560065980 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2399330082690 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2419330116810 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2437550167010 | Phenylpropanoid | PAL | medium | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2437550167020 | Phenylpropanoid | PAL | medium | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2447110203060 | Phenylpropanoid | PAL | high | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2460850270530 | Phenylpropanoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2384730062970 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2387560065960 | Rosmarinic Acid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2387560065980 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2399330082690 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2419330116810 | Rosmarinic Acid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Scapania2437550167010 | Rosmarinic Acid | PAL | medium | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Scapania2437550167020 | Rosmarinic Acid | PAL | medium | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2447110203060 | Rosmarinic Acid | PAL | high | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Scapania2460850270530 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |