PlantSME Plant secondary metabolism enzyme database

Scapania (scapania)

Imported from atlas release summary for Scapania.

718
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.51% Terpenoid pathway 23.68% Alkaloid pathway 22.7% Flavonoid pathway 11.42% Rosmarinic acid pathway 10.86% Steroid pathway 6.82%
Family Distribution
C4H 7.18% C3'H/CYP98A 6.05% 4CL 5.07% CYP76 4.83% BAHD 4.55% NMT 3.61% STR 3.38% IFS 3.28%
Other Families 62.05%
More Families (97)
POD 69 3.24% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 57 2.67% H6H 45 2.11% GS 41 1.92% IFR 40 1.88% F3'H/CYP75B 36 1.69% DWF4/CYP90B1 35 1.64% UGT 34 1.59% TRI/TRII 33 1.55% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.27% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 23 1.08% CODM/T6ODM 22 1.03% F3'5'H/CYP75A 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% ANS/LDOX 9 0.42% GES 8 0.38% CYP719 8 0.38% SLS 8 0.38% DFR 8 0.38% CYP90D1 8 0.38% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 176 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 82 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Scapania2464950296630 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2466900305890 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2466950306170 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2467340307490 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2467830310480 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2470190323130 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2471220327410 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2471460328150 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2472050331170 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2472440332270 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2473540338570 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2475470344840 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2478110353580 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2478110353610 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2480300358940 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2485660368910 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Scapania2485680368940 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2486650370310 Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
Scapania2487420371390 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2874110385810 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania2874130385820 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Scapania3970390120 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR