PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

1097
Candidate Protein Records
716
Pathway-Level Records
2135
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Snep2434640157640 Alkaloid STR low borderline
Snep2437930168100 Alkaloid STR low borderline
Snep2441620181390 Alkaloid STR medium pass
Snep2446230199780 Alkaloid STR low borderline
Snep2447620205220 Alkaloid STR low borderline
Snep2447620205240 Alkaloid STR low borderline
Snep2450880219870 Alkaloid STR low borderline
Snep2452570229190 Alkaloid STR low borderline
Snep2453430233640 Alkaloid STR low borderline
Snep2453760235060 Alkaloid STR low borderline
Snep2454670239370 Alkaloid STR low borderline
Snep2462240278100 Alkaloid STR low borderline
Snep2462340278710 Alkaloid STR low borderline
Snep2464950296630 Alkaloid STR low borderline
Snep2466900305890 Alkaloid STR low borderline
Snep2466950306170 Alkaloid STR low borderline
Snep2467340307490 Alkaloid STR low borderline
Snep2467830310480 Alkaloid STR low borderline
Snep2470190323130 Alkaloid STR low borderline
Snep2471220327410 Alkaloid STR low borderline
Snep2471460328150 Alkaloid STR low borderline
Snep2472050331170 Alkaloid STR low borderline
Snep2472440332270 Alkaloid STR low borderline
Snep2473540338570 Alkaloid STR low borderline
Snep2475470344840 Alkaloid STR medium pass
Snep2478110353580 Alkaloid STR low borderline
Snep2478110353610 Alkaloid STR low borderline
Snep2480300358940 Alkaloid STR low borderline
Snep2485660368910 Alkaloid STR medium pass
Snep2485680368940 Alkaloid STR low borderline
Snep2486650370310 Alkaloid STR medium pass
Snep2487420371390 Alkaloid STR low borderline
Snep2874110385810 Alkaloid STR low borderline
Snep2874130385820 Alkaloid STR low borderline
Snep3970390120 Alkaloid STR low borderline
Snep1604480004020 Alkaloid T16H medium pass
Snep2086630012960 Alkaloid T16H medium borderline
Snep2304800027160 Alkaloid T16H medium borderline
Snep2342350036550 Alkaloid T16H medium borderline
Snep2349220039230 Alkaloid T16H low borderline
Snep2369130049780 Alkaloid T16H medium borderline
Snep2389740068750 Alkaloid T16H medium borderline
Snep2393590074450 Alkaloid T16H medium borderline
Snep2403940089240 Alkaloid T16H medium borderline
Snep2423460125890 Alkaloid T16H medium borderline
Snep2426410133610 Alkaloid T16H medium borderline
Snep2426410133620 Alkaloid T16H medium borderline
Snep2437400166560 Alkaloid T16H low borderline
Snep2443970190120 Alkaloid T16H medium borderline
Snep2448460209000 Alkaloid T16H medium borderline