PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

1097
Candidate Protein Records
716
Pathway-Level Records
2135
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Snep2463600286360 Alkaloid SGD low borderline
Snep2464060289880 Alkaloid SGD low borderline
Snep2480900361730 Alkaloid SGD low borderline
Snep2911220386950 Alkaloid SGD medium pass
Snep2911250386960 Alkaloid SGD medium pass
Snep2331440033090 Alkaloid SLS medium borderline
Snep2428780139650 Alkaloid SLS medium borderline
Snep2429450142080 Alkaloid SLS medium borderline
Snep2429450142100 Alkaloid SLS medium borderline
Snep2429450142110 Alkaloid SLS medium borderline
Snep2460550268820 Alkaloid SLS medium borderline
Snep2477000348660 Alkaloid SLS medium borderline
Snep2479450357320 Alkaloid SLS medium borderline
Snep2037480010640 Alkaloid STR low borderline
Snep2078040012360 Alkaloid STR low borderline
Snep2094240013380 Alkaloid STR low borderline
Snep2095700013430 Alkaloid STR low borderline
Snep2258020020660 Alkaloid STR low borderline
Snep2272560022710 Alkaloid STR low borderline
Snep2272560022720 Alkaloid STR low borderline
Snep2290030024570 Alkaloid STR low borderline
Snep2296740025460 Alkaloid STR low borderline
Snep2308650028100 Alkaloid STR medium pass
Snep2317610030030 Alkaloid STR low borderline
Snep2325370031180 Alkaloid STR low borderline
Snep2327730031860 Alkaloid STR low borderline
Snep2337690035850 Alkaloid STR low borderline
Snep2352830040640 Alkaloid STR low borderline
Snep2358400042860 Alkaloid STR low borderline
Snep2363520046300 Alkaloid STR low borderline
Snep2372970052580 Alkaloid STR low borderline
Snep2384490062710 Alkaloid STR low borderline
Snep2393560074380 Alkaloid STR medium pass
Snep2401420085760 Alkaloid STR low borderline
Snep2401420085770 Alkaloid STR low borderline
Snep2405400091550 Alkaloid STR low borderline
Snep2406310093370 Alkaloid STR low borderline
Snep2413990106220 Alkaloid STR low borderline
Snep2413990106230 Alkaloid STR low borderline
Snep2415800109070 Alkaloid STR medium pass
Snep2417810113140 Alkaloid STR low borderline
Snep2418090113820 Alkaloid STR low borderline
Snep2418370114690 Alkaloid STR medium pass
Snep2420540119680 Alkaloid STR low borderline
Snep2421110120720 Alkaloid STR low borderline
Snep2425580131050 Alkaloid STR low borderline
Snep2428020137360 Alkaloid STR low borderline
Snep2429050140670 Alkaloid STR medium pass
Snep2429050140680 Alkaloid STR medium pass
Snep2433970155610 Alkaloid STR medium pass