PlantSME Plant secondary metabolism enzyme database

Schrenkiella parvula (schrenkiella_parvula)

Imported from atlas release summary for Schrenkiella parvula.

1197
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.66% Phenylpropanoid pathway 22.22% Alkaloid pathway 20.89% Flavonoid pathway 11.78% Rosmarinic acid pathway 8.94% Steroid pathway 6.52%
Family Distribution
BAHD 6.51% C4H 6.34% C3'H/CYP98A 5.96% 4CL 4.52% POD 4.45% CYP76 4.32% IFS 3.8% UGT 3.46%
Other Families 60.64%
More Families (96)
UFGT 97 3.32% 7DLGT 95 3.25% T3O 94 3.22% NMT 81 2.77% DWF4/CYP90B1 79 2.71% F3H 76 2.6% BR6OX2/CYP85A2 59 2.02% STR 53 1.82% SMT1/SMT2/SMT3 53 1.82% F3'H/CYP75B 52 1.78% CODM/T6ODM 47 1.61% CYP71 47 1.61% H6H 39 1.34% SGD 38 1.3% TRI/TRII 35 1.2% CSE 33 1.13% T16H 32 1.1% IFR 32 1.1% PYKS 28 0.96% CAD 28 0.96% RAS 25 0.86% BBE 23 0.79% LAC 23 0.79% COMT 23 0.79% CAS 23 0.79% G8O/G8H 22 0.75% F3'5'H/CYP75A 21 0.72% F5H/CYP84A 21 0.72% TAT 21 0.72% GS 20 0.69% FNS 20 0.69% ANR 19 0.65% IO 18 0.62% SLS 18 0.62% CCR 18 0.62% LAMT 16 0.55% HCT 15 0.51% 8HGO 14 0.48% GES 14 0.48% CYP90D1 14 0.48% TPS 14 0.48% 16OMT 13 0.45% 7DLH 13 0.45% ANS/LDOX 11 0.38% ROT3/CYP90C1 11 0.38% CPD/CYP90A1 11 0.38% BR6OX1/CYP85A1 11 0.38% GGPPS 10 0.34% FPPS 10 0.34% COR 9 0.31% PMT 9 0.31% PAL 9 0.31% NCS 8 0.27% CYP719 8 0.27% CPR 8 0.27% CNMT 7 0.24% CCoAOMT 7 0.24% SQE 7 0.24% AACT 7 0.24% MPO 6 0.21% DFR 6 0.21% CYP51G1 6 0.21% CHS 5 0.17% SMO1/SMO2 5 0.17% SQS/FDFT1 5 0.17% DET2 5 0.17% MVD 5 0.17% XMT_MXMT_DXMT 4 0.14% CYP80F1 3 0.1% CYP80B1 3 0.1% CHI 3 0.1% HPPR 3 0.1% DWF1 3 0.1% DWF7 3 0.1% MVK 3 0.1% DXS 3 0.1% TDC 2 0.07% ADC 2 0.07% TYDC_DDC 2 0.07% ISY 2 0.07% FLS 2 0.07% CPI1 2 0.07% MCT/IspD 2 0.07% IDI 2 0.07% CMK/IspE 2 0.07% HMGR 2 0.07% ODC 1 0.03% HYD1 1 0.03% DWF5 1 0.03% FK 1 0.03% PMK 1 0.03% MDS/IspF 1 0.03% DXR 1 0.03% HMGS 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 355 19 BAHD (155) View species results
Phenylpropanoid pathway 266 12 POD (125) View species results
Alkaloid pathway 250 20 7DLGT (41) View species results
Flavonoid pathway 141 7 UFGT (90) View species results
Rosmarinic acid pathway 107 7 C4H (40) View species results
Steroid pathway 78 11 SMT1/SMT2/SMT3 (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1139 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 230 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
schrenkiella_parvula_Sp1g39450.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp2g03390.1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
schrenkiella_parvula_Sp2g03400.1 Alkaloid GES medium pass GES__00010__sp_Q93YV0_GES_ARATH
schrenkiella_parvula_Sp2g09440.1 Alkaloid GES low borderline GES__00009__sp_Q8GUE4_GERS_CINTE
schrenkiella_parvula_Sp2g15055.1 Alkaloid GES medium pass GES__00006__sp_Q4JHG3_GRNLC_PERFH
schrenkiella_parvula_Sp2g15060.1 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
schrenkiella_parvula_Sp3g12790.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp3g12800.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp3g12810.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp5g14640.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp5g34510.1 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
schrenkiella_parvula_Sp6g02810.1 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
schrenkiella_parvula_Sp7g10790.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
schrenkiella_parvula_Sp7g14110.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU