Solanum sitiens (solanum_sitiens)
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Imported from atlas release summary for Solanum sitiens.
1408
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1408
Candidate Genes
C4H
6.86%
C3'H/CYP98A
5.9%
BAHD
5.05%
UGT
4.14%
POD
4.02%
CYP76
3.83%
4CL
3.81%
7DLGT
3.64%
Other Families
62.75%
More Families (97)
T3O
141
3.31%
IFS
141
3.31%
UFGT
135
3.17%
F3H
125
2.94%
F3'H/CYP75B
119
2.8%
DWF4/CYP90B1
115
2.7%
BR6OX2/CYP85A2
99
2.33%
NMT
93
2.19%
CYP71
85
2.0%
CODM/T6ODM
75
1.76%
STR
71
1.67%
H6H
70
1.65%
TPS
54
1.27%
TRI/TRII
53
1.25%
CAD
53
1.25%
SMT1/SMT2/SMT3
53
1.25%
GES
51
1.2%
TAT
51
1.2%
F5H/CYP84A
49
1.15%
PAL
45
1.06%
LAC
43
1.01%
G8O/G8H
39
0.92%
CSE
38
0.89%
IO
37
0.87%
T16H
36
0.85%
CAS
35
0.82%
GS
34
0.8%
7DLH
34
0.8%
PYKS
33
0.78%
F3'5'H/CYP75A
31
0.73%
IFR
30
0.71%
SLS
28
0.66%
COMT
26
0.61%
ANS/LDOX
25
0.59%
PMT
24
0.56%
HCT
24
0.56%
CYP90D1
24
0.56%
BR6OX1/CYP85A1
21
0.49%
FNS
20
0.47%
CCR
20
0.47%
16OMT
19
0.45%
BBE
19
0.45%
ANR
18
0.42%
CPD/CYP90A1
18
0.42%
NCS
17
0.4%
CYP51G1
17
0.4%
8HGO
15
0.35%
SGD
15
0.35%
RAS
15
0.35%
CNMT
13
0.31%
LAMT
12
0.28%
DFR
12
0.28%
CCoAOMT
12
0.28%
ROT3/CYP90C1
12
0.28%
COR
11
0.26%
CHS
11
0.26%
FPPS
11
0.26%
MPO
9
0.21%
SQS/FDFT1
9
0.21%
GGPPS
9
0.21%
TYDC_DDC
8
0.19%
CPR
7
0.16%
ISY
6
0.14%
HPPR
6
0.14%
AACT
6
0.14%
CYP719
5
0.12%
TDC
5
0.12%
HMGR
5
0.12%
MVD
5
0.12%
CYP80B1
4
0.09%
CHI
4
0.09%
DET2
4
0.09%
SMO1/SMO2
4
0.09%
DXS
4
0.09%
ODC
3
0.07%
FLS
3
0.07%
SQE
3
0.07%
DWF7
3
0.07%
MVK
3
0.07%
HMGS
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
DWF1
2
0.05%
DWF5
2
0.05%
HYD1
2
0.05%
PMK
2
0.05%
IDI
2
0.05%
CYP80F1
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 382 | 19 | BAHD (130) | View species results |
| Alkaloid pathway | 321 | 22 | 7DLGT (57) | View species results |
| Phenylpropanoid pathway | 310 | 11 | POD (137) | View species results |
| Flavonoid pathway | 183 | 10 | UFGT (102) | View species results |
| Rosmarinic acid pathway | 144 | 7 | C4H (57) | View species results |
| Steroid pathway | 68 | 13 | CAS (22) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1762 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 254 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| solanum_sitiens_g11102.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g11206.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g11207.t1 | Alkaloid | PYKS | medium | pass |
| solanum_sitiens_g12174.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g1285.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g13341.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g13728.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g13809.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g15183.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g15940.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g16869.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g1762.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g18671.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g18672.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g19150.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g19771.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g22279.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g24371.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g24372.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g24373.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g25816.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g27704.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g29124.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g29473.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g4363.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g4364.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g4365.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g4552.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g6901.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g8167.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g933.t1 | Alkaloid | PYKS | low | borderline |
| solanum_sitiens_g9471.t1 | Alkaloid | PYKS | high | pass |
| solanum_sitiens_g9977.t1 | Alkaloid | PYKS | low | borderline |