PlantSME Plant secondary metabolism enzyme database

Solanum sitiens (solanum_sitiens)

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Imported from atlas release summary for Solanum sitiens.

1408
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.13% Alkaloid pathway 22.8% Phenylpropanoid pathway 22.02% Flavonoid pathway 13.0% Rosmarinic acid pathway 10.23% Steroid pathway 4.83%
Family Distribution
C4H 6.86% C3'H/CYP98A 5.9% BAHD 5.05% UGT 4.14% POD 4.02% CYP76 3.83% 4CL 3.81% 7DLGT 3.64%
Other Families 62.75%
More Families (97)
T3O 141 3.31% IFS 141 3.31% UFGT 135 3.17% F3H 125 2.94% F3'H/CYP75B 119 2.8% DWF4/CYP90B1 115 2.7% BR6OX2/CYP85A2 99 2.33% NMT 93 2.19% CYP71 85 2.0% CODM/T6ODM 75 1.76% STR 71 1.67% H6H 70 1.65% TPS 54 1.27% TRI/TRII 53 1.25% CAD 53 1.25% SMT1/SMT2/SMT3 53 1.25% GES 51 1.2% TAT 51 1.2% F5H/CYP84A 49 1.15% PAL 45 1.06% LAC 43 1.01% G8O/G8H 39 0.92% CSE 38 0.89% IO 37 0.87% T16H 36 0.85% CAS 35 0.82% GS 34 0.8% 7DLH 34 0.8% PYKS 33 0.78% F3'5'H/CYP75A 31 0.73% IFR 30 0.71% SLS 28 0.66% COMT 26 0.61% ANS/LDOX 25 0.59% PMT 24 0.56% HCT 24 0.56% CYP90D1 24 0.56% BR6OX1/CYP85A1 21 0.49% FNS 20 0.47% CCR 20 0.47% 16OMT 19 0.45% BBE 19 0.45% ANR 18 0.42% CPD/CYP90A1 18 0.42% NCS 17 0.4% CYP51G1 17 0.4% 8HGO 15 0.35% SGD 15 0.35% RAS 15 0.35% CNMT 13 0.31% LAMT 12 0.28% DFR 12 0.28% CCoAOMT 12 0.28% ROT3/CYP90C1 12 0.28% COR 11 0.26% CHS 11 0.26% FPPS 11 0.26% MPO 9 0.21% SQS/FDFT1 9 0.21% GGPPS 9 0.21% TYDC_DDC 8 0.19% CPR 7 0.16% ISY 6 0.14% HPPR 6 0.14% AACT 6 0.14% CYP719 5 0.12% TDC 5 0.12% HMGR 5 0.12% MVD 5 0.12% CYP80B1 4 0.09% CHI 4 0.09% DET2 4 0.09% SMO1/SMO2 4 0.09% DXS 4 0.09% ODC 3 0.07% FLS 3 0.07% SQE 3 0.07% DWF7 3 0.07% MVK 3 0.07% HMGS 3 0.07% 6OMT_4OMT_SOMT 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% DWF1 2 0.05% DWF5 2 0.05% HYD1 2 0.05% PMK 2 0.05% IDI 2 0.05% CYP80F1 1 0.02% CPI1 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 382 19 BAHD (130) View species results
Alkaloid pathway 321 22 7DLGT (57) View species results
Phenylpropanoid pathway 310 11 POD (137) View species results
Flavonoid pathway 183 10 UFGT (102) View species results
Rosmarinic acid pathway 144 7 C4H (57) View species results
Steroid pathway 68 13 CAS (22) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1762 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 254 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status Best Target
solanum_sitiens_g10543.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g10545.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g10547.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g10551.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g13373.t1 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g16732.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g25193.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g30727.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g3519.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g5768.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g834.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
solanum_sitiens_g9365.t1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH