PlantSME Plant secondary metabolism enzyme database

Speranskia yunnanensis (speranskia_yunnanensis)

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Imported from atlas release summary for Speranskia yunnanensis.

1380
Family-Level Assignments
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.72% Alkaloid pathway 26.09% Phenylpropanoid pathway 17.54% Flavonoid pathway 14.13% Steroid pathway 5.94% Rosmarinic acid pathway 5.58%
Family Distribution
C4H 8.04% C3'H/CYP98A 4.92% BAHD 4.5% UGT 4.39% 7DLGT 4.13% CYP76 4.13% UFGT 3.99% F3H 3.76%
Other Families 62.14%
More Families (96)
POD 126 3.57% IFS 123 3.48% 4CL 99 2.8% NMT 80 2.26% CODM/T6ODM 80 2.26% DWF4/CYP90B1 78 2.21% F3'H/CYP75B 77 2.18% T3O 71 2.01% STR 70 1.98% TPS 68 1.92% GES 66 1.87% H6H 65 1.84% CAS 65 1.84% G8O/G8H 56 1.58% CAD 50 1.41% T16H 45 1.27% BR6OX2/CYP85A2 40 1.13% SMT1/SMT2/SMT3 38 1.08% FNS 37 1.05% SGD 33 0.93% IFR 32 0.91% SLS 31 0.88% CSE 31 0.88% GS 29 0.82% LAC 28 0.79% RAS 28 0.79% PYKS 27 0.76% TRI/TRII 27 0.76% F5H/CYP84A 27 0.76% 7DLH 25 0.71% CYP90D1 25 0.71% F3'5'H/CYP75A 24 0.68% PAL 24 0.68% CYP71 24 0.68% HCT 23 0.65% IO 21 0.59% CPD/CYP90A1 21 0.59% PMT 20 0.57% COMT 20 0.57% COR 18 0.51% BBE 17 0.48% NCS 16 0.45% CNMT 16 0.45% LAMT 15 0.42% TAT 14 0.4% ANR 13 0.37% CCR 13 0.37% CYP719 12 0.34% 8HGO 12 0.34% DFR 12 0.34% ROT3/CYP90C1 12 0.34% 16OMT 10 0.28% ANS/LDOX 10 0.28% ISY 9 0.25% FPPS 9 0.25% AACT 7 0.2% MPO 6 0.17% CHS 6 0.17% CCoAOMT 6 0.17% HPPR 6 0.17% CPR 6 0.17% SQE 6 0.17% ODC 5 0.14% CYP80F1 5 0.14% CYP51G1 5 0.14% SMO1/SMO2 5 0.14% BR6OX1/CYP85A1 5 0.14% GGPPS 5 0.14% MVK 5 0.14% CYP80B1 4 0.11% TYDC_DDC 4 0.11% SQS/FDFT1 4 0.11% DXS 4 0.11% XMT_MXMT_DXMT 3 0.08% CHI 3 0.08% MCT/IspD 3 0.08% HMGR 3 0.08% MVD 3 0.08% DWF1 2 0.06% DWF5 2 0.06% DET2 2 0.06% HDS/IspG 2 0.06% HDR/IspH 2 0.06% IDI 2 0.06% PMK 2 0.06% TDC 1 0.03% 6OMT_4OMT_SOMT 1 0.03% ADC 1 0.03% CPI1 1 0.03% FK 1 0.03% DWF7 1 0.03% HYD1 1 0.03% DXR 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Family-Level Assignments Families Top family Results
Terpenoid pathway 424 19 UGT (141) View species results
Alkaloid pathway 360 22 7DLGT (74) View species results
Phenylpropanoid pathway 242 12 POD (112) View species results
Flavonoid pathway 195 12 UFGT (131) View species results
Steroid pathway 82 12 CAS (41) View species results
Rosmarinic acid pathway 77 7 4CL (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Family-level assignments Included families
P450/oxygenase 24 1335 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status
speranskia_yunnanensis_evm.model.ctg000060_np1212.575 Alkaloid ISY low borderline
speranskia_yunnanensis_evm.model.ctg000080_np1212.619 Alkaloid ISY high pass
speranskia_yunnanensis_evm.model.ctg000130_np1212.1460 Alkaloid ISY medium pass
speranskia_yunnanensis_evm.model.ctg000130_np1212.1461 Alkaloid ISY medium pass
speranskia_yunnanensis_evm.model.ctg000590_np1212.1058 Alkaloid ISY medium pass
speranskia_yunnanensis_evm.model.ctg000780_np1212.520 Alkaloid ISY medium pass
speranskia_yunnanensis_evm.model.ctg001690_np1212.10 Alkaloid ISY low borderline
speranskia_yunnanensis_evm.model.ctg001690_np1212.4 Alkaloid ISY low borderline
speranskia_yunnanensis_evm.model.ctg001690_np1212.7 Alkaloid ISY low borderline