Speranskia yunnanensis (speranskia_yunnanensis)
/
Imported from atlas release summary for Speranskia yunnanensis.
1380
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1380
Candidate Genes
C4H
8.04%
C3'H/CYP98A
4.92%
BAHD
4.5%
UGT
4.39%
7DLGT
4.13%
CYP76
4.13%
UFGT
3.99%
F3H
3.76%
Other Families
62.14%
More Families (96)
POD
126
3.57%
IFS
123
3.48%
4CL
99
2.8%
NMT
80
2.26%
CODM/T6ODM
80
2.26%
DWF4/CYP90B1
78
2.21%
F3'H/CYP75B
77
2.18%
T3O
71
2.01%
STR
70
1.98%
TPS
68
1.92%
GES
66
1.87%
H6H
65
1.84%
CAS
65
1.84%
G8O/G8H
56
1.58%
CAD
50
1.41%
T16H
45
1.27%
BR6OX2/CYP85A2
40
1.13%
SMT1/SMT2/SMT3
38
1.08%
FNS
37
1.05%
SGD
33
0.93%
IFR
32
0.91%
SLS
31
0.88%
CSE
31
0.88%
GS
29
0.82%
LAC
28
0.79%
RAS
28
0.79%
PYKS
27
0.76%
TRI/TRII
27
0.76%
F5H/CYP84A
27
0.76%
7DLH
25
0.71%
CYP90D1
25
0.71%
F3'5'H/CYP75A
24
0.68%
PAL
24
0.68%
CYP71
24
0.68%
HCT
23
0.65%
IO
21
0.59%
CPD/CYP90A1
21
0.59%
PMT
20
0.57%
COMT
20
0.57%
COR
18
0.51%
BBE
17
0.48%
NCS
16
0.45%
CNMT
16
0.45%
LAMT
15
0.42%
TAT
14
0.4%
ANR
13
0.37%
CCR
13
0.37%
CYP719
12
0.34%
8HGO
12
0.34%
DFR
12
0.34%
ROT3/CYP90C1
12
0.34%
16OMT
10
0.28%
ANS/LDOX
10
0.28%
ISY
9
0.25%
FPPS
9
0.25%
AACT
7
0.2%
MPO
6
0.17%
CHS
6
0.17%
CCoAOMT
6
0.17%
HPPR
6
0.17%
CPR
6
0.17%
SQE
6
0.17%
ODC
5
0.14%
CYP80F1
5
0.14%
CYP51G1
5
0.14%
SMO1/SMO2
5
0.14%
BR6OX1/CYP85A1
5
0.14%
GGPPS
5
0.14%
MVK
5
0.14%
CYP80B1
4
0.11%
TYDC_DDC
4
0.11%
SQS/FDFT1
4
0.11%
DXS
4
0.11%
XMT_MXMT_DXMT
3
0.08%
CHI
3
0.08%
MCT/IspD
3
0.08%
HMGR
3
0.08%
MVD
3
0.08%
DWF1
2
0.06%
DWF5
2
0.06%
DET2
2
0.06%
HDS/IspG
2
0.06%
HDR/IspH
2
0.06%
IDI
2
0.06%
PMK
2
0.06%
TDC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
ADC
1
0.03%
CPI1
1
0.03%
FK
1
0.03%
DWF7
1
0.03%
HYD1
1
0.03%
DXR
1
0.03%
MDS/IspF
1
0.03%
HMGS
1
0.03%
CMK/IspE
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 424 | 19 | UGT (141) | View species results |
| Alkaloid pathway | 360 | 22 | 7DLGT (74) | View species results |
| Phenylpropanoid pathway | 242 | 12 | POD (112) | View species results |
| Flavonoid pathway | 195 | 12 | UFGT (131) | View species results |
| Steroid pathway | 82 | 12 | CAS (41) | View species results |
| Rosmarinic acid pathway | 77 | 7 | 4CL (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1335 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TAT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| speranskia_yunnanensis_evm.model.ctg000130_np1212.1990 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| speranskia_yunnanensis_evm.model.ctg000130_np1212.205 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.165 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.166 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.167 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.169 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.170 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000280_np1212.172 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000290_np1212.341 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| speranskia_yunnanensis_evm.model.ctg000580_np1212.170 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000580_np1212.9 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| speranskia_yunnanensis_evm.model.ctg000620_np1212.1569 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| speranskia_yunnanensis_evm.model.ctg000760_np1212.203 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| speranskia_yunnanensis_evm.model.ctg001420_np1212.1038 | Rosmarinic Acid | TAT | medium | pass | TAT__00002__sp_Q9C969_ISS1_ARATH |