PlantSME Plant secondary metabolism enzyme database

Sphagnum girgensohnii (sphagnum_girgensohnii)

Imported from atlas release summary for Sphagnum girgensohnii.

917
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.01% Terpenoid pathway 24.1% Alkaloid pathway 20.94% Flavonoid pathway 10.25% Rosmarinic acid pathway 9.38% Steroid pathway 6.32%
Family Distribution
POD 7.79% BAHD 7.55% C4H 5.08% 4CL 5.03% C3'H/CYP98A 4.62% NMT 4.01% STR 3.4% CYP76 2.8%
Other Families 59.72%
More Families (96)
PAL 57 2.66% T3O 53 2.47% IFS 51 2.38% IFR 49 2.28% GS 48 2.24% PYKS 48 2.24% F3H 47 2.19% CAD 45 2.1% BR6OX2/CYP85A2 44 2.05% DWF4/CYP90B1 37 1.72% F3'H/CYP75B 32 1.49% CHS 30 1.4% TRI/TRII 29 1.35% SMT1/SMT2/SMT3 28 1.31% CYP71 28 1.31% UGT 27 1.26% CODM/T6ODM 26 1.21% H6H 21 0.98% T16H 20 0.93% DFR 19 0.89% CCR 19 0.89% RAS 18 0.84% F3'5'H/CYP75A 17 0.79% 8HGO 16 0.75% ANR 16 0.75% CSE 16 0.75% CAS 16 0.75% AACT 16 0.75% SLS 15 0.7% LAC 15 0.7% IO 14 0.65% 7DLGT 14 0.65% HCT 14 0.65% G8O/G8H 13 0.61% COMT 13 0.61% CYP90D1 13 0.61% 7DLH 12 0.56% UFGT 12 0.56% SGD 11 0.51% CPD/CYP90A1 11 0.51% TPS 11 0.51% FNS 10 0.47% ISY 9 0.42% BR6OX1/CYP85A1 9 0.42% DXS 9 0.42% 16OMT 8 0.37% COR 7 0.33% CPR 7 0.33% ROT3/CYP90C1 7 0.33% SMO1/SMO2 7 0.33% FK 7 0.33% GGPPS 7 0.33% CNMT 6 0.28% MPO 6 0.28% F5H/CYP84A 6 0.28% HPPR 6 0.28% DET2 6 0.28% MVK 6 0.28% PMT 5 0.23% NCS 5 0.23% TYDC_DDC 5 0.23% GES 5 0.23% CCoAOMT 5 0.23% DWF5 5 0.23% HDS/IspG 5 0.23% FPPS 5 0.23% LAMT 4 0.19% CYP719 4 0.19% TDC 4 0.19% BBE 4 0.19% SQS/FDFT1 4 0.19% SQE 4 0.19% HDR/IspH 4 0.19% ODC 3 0.14% FLS 3 0.14% ANS/LDOX 3 0.14% TAT 3 0.14% CYP51G1 3 0.14% DWF1 3 0.14% HMGR 3 0.14% HMGS 3 0.14% MDS/IspF 3 0.14% CYP80B1 2 0.09% 6OMT_4OMT_SOMT 2 0.09% CHI 2 0.09% DWF7 2 0.09% HYD1 2 0.09% CMK/IspE 2 0.09% MVD 2 0.09% DXR 2 0.09% ADC 1 0.05% XMT_MXMT_DXMT 1 0.05% CPI1 1 0.05% IDI 1 0.05% PMK 1 0.05% MCT/IspD 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 266 12 POD (158) View species results
Terpenoid pathway 221 20 BAHD (128) View species results
Alkaloid pathway 192 20 NMT (35) View species results
Flavonoid pathway 94 10 CHS (30) View species results
Rosmarinic acid pathway 86 7 C4H (28) View species results
Steroid pathway 58 13 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 659 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 194 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DXR
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Gene Pathway Family Confidence Status Best Target
Sgircontig_4860177980 Terpenoid DXR high pass DXR__00001__sp_Q9XFS9_DXR_ARATH
Sgircontig_5440200960 Terpenoid DXR high pass DXR__00001__sp_Q9XFS9_DXR_ARATH