Sphagnum girgensohnii (sphagnum_girgensohnii)
Imported from atlas release summary for Sphagnum girgensohnii.
917
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
917
Candidate Genes
POD
7.79%
BAHD
7.55%
C4H
5.08%
4CL
5.03%
C3'H/CYP98A
4.62%
NMT
4.01%
STR
3.4%
CYP76
2.8%
Other Families
59.72%
More Families (96)
PAL
57
2.66%
T3O
53
2.47%
IFS
51
2.38%
IFR
49
2.28%
GS
48
2.24%
PYKS
48
2.24%
F3H
47
2.19%
CAD
45
2.1%
BR6OX2/CYP85A2
44
2.05%
DWF4/CYP90B1
37
1.72%
F3'H/CYP75B
32
1.49%
CHS
30
1.4%
TRI/TRII
29
1.35%
SMT1/SMT2/SMT3
28
1.31%
CYP71
28
1.31%
UGT
27
1.26%
CODM/T6ODM
26
1.21%
H6H
21
0.98%
T16H
20
0.93%
DFR
19
0.89%
CCR
19
0.89%
RAS
18
0.84%
F3'5'H/CYP75A
17
0.79%
8HGO
16
0.75%
ANR
16
0.75%
CSE
16
0.75%
CAS
16
0.75%
AACT
16
0.75%
SLS
15
0.7%
LAC
15
0.7%
IO
14
0.65%
7DLGT
14
0.65%
HCT
14
0.65%
G8O/G8H
13
0.61%
COMT
13
0.61%
CYP90D1
13
0.61%
7DLH
12
0.56%
UFGT
12
0.56%
SGD
11
0.51%
CPD/CYP90A1
11
0.51%
TPS
11
0.51%
FNS
10
0.47%
ISY
9
0.42%
BR6OX1/CYP85A1
9
0.42%
DXS
9
0.42%
16OMT
8
0.37%
COR
7
0.33%
CPR
7
0.33%
ROT3/CYP90C1
7
0.33%
SMO1/SMO2
7
0.33%
FK
7
0.33%
GGPPS
7
0.33%
CNMT
6
0.28%
MPO
6
0.28%
F5H/CYP84A
6
0.28%
HPPR
6
0.28%
DET2
6
0.28%
MVK
6
0.28%
PMT
5
0.23%
NCS
5
0.23%
TYDC_DDC
5
0.23%
GES
5
0.23%
CCoAOMT
5
0.23%
DWF5
5
0.23%
HDS/IspG
5
0.23%
FPPS
5
0.23%
LAMT
4
0.19%
CYP719
4
0.19%
TDC
4
0.19%
BBE
4
0.19%
SQS/FDFT1
4
0.19%
SQE
4
0.19%
HDR/IspH
4
0.19%
ODC
3
0.14%
FLS
3
0.14%
ANS/LDOX
3
0.14%
TAT
3
0.14%
CYP51G1
3
0.14%
DWF1
3
0.14%
HMGR
3
0.14%
HMGS
3
0.14%
MDS/IspF
3
0.14%
CYP80B1
2
0.09%
6OMT_4OMT_SOMT
2
0.09%
CHI
2
0.09%
DWF7
2
0.09%
HYD1
2
0.09%
CMK/IspE
2
0.09%
MVD
2
0.09%
DXR
2
0.09%
ADC
1
0.05%
XMT_MXMT_DXMT
1
0.05%
CPI1
1
0.05%
IDI
1
0.05%
PMK
1
0.05%
MCT/IspD
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 266 | 12 | POD (158) | View species results |
| Terpenoid pathway | 221 | 20 | BAHD (128) | View species results |
| Alkaloid pathway | 192 | 20 | NMT (35) | View species results |
| Flavonoid pathway | 94 | 10 | CHS (30) | View species results |
| Rosmarinic acid pathway | 86 | 7 | C4H (28) | View species results |
| Steroid pathway | 58 | 13 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 659 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 194 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Sgircontig_10000001310 | Alkaloid | GS | medium | pass |
| Sgircontig_10250007390 | Alkaloid | GS | high | pass |
| Sgircontig_10440016540 | Alkaloid | GS | low | borderline |
| Sgircontig_10580023190 | Alkaloid | GS | low | borderline |
| Sgircontig_11060034970 | Alkaloid | GS | low | borderline |
| Sgircontig_11100036090 | Alkaloid | GS | medium | pass |
| Sgircontig_120055990 | Alkaloid | GS | high | pass |
| Sgircontig_120056000 | Alkaloid | GS | medium | pass |
| Sgircontig_1480065510 | Alkaloid | GS | low | borderline |
| Sgircontig_1640068780 | Alkaloid | GS | medium | pass |
| Sgircontig_1670070760 | Alkaloid | GS | medium | pass |
| Sgircontig_1670070780 | Alkaloid | GS | high | pass |
| Sgircontig_2010084440 | Alkaloid | GS | low | borderline |
| Sgircontig_2160088490 | Alkaloid | GS | low | borderline |
| Sgircontig_2880111720 | Alkaloid | GS | low | borderline |
| Sgircontig_2960113690 | Alkaloid | GS | high | pass |
| Sgircontig_3690141300 | Alkaloid | GS | low | borderline |
| Sgircontig_3810146890 | Alkaloid | GS | low | borderline |
| Sgircontig_4340164850 | Alkaloid | GS | high | pass |
| Sgircontig_5150187980 | Alkaloid | GS | low | borderline |
| Sgircontig_5240192130 | Alkaloid | GS | low | borderline |
| Sgircontig_5330196510 | Alkaloid | GS | low | borderline |
| Sgircontig_5480204930 | Alkaloid | GS | low | borderline |
| Sgircontig_5490209150 | Alkaloid | GS | low | borderline |
| Sgircontig_6130224000 | Alkaloid | GS | low | borderline |
| Sgircontig_6230226770 | Alkaloid | GS | high | pass |
| Sgircontig_6360230410 | Alkaloid | GS | medium | pass |
| Sgircontig_6480232900 | Alkaloid | GS | low | borderline |
| Sgircontig_6930247840 | Alkaloid | GS | low | borderline |
| Sgircontig_7240259920 | Alkaloid | GS | low | borderline |
| Sgircontig_7240259930 | Alkaloid | GS | low | borderline |
| Sgircontig_730264440 | Alkaloid | GS | low | borderline |
| Sgircontig_7310265300 | Alkaloid | GS | low | borderline |
| Sgircontig_8580301100 | Alkaloid | GS | low | borderline |
| Sgircontig_8610302150 | Alkaloid | GS | medium | pass |
| Sgircontig_8610302160 | Alkaloid | GS | medium | pass |
| Sgircontig_8610302190 | Alkaloid | GS | medium | pass |
| Sgircontig_8770306490 | Alkaloid | GS | medium | pass |
| Sgircontig_9000314200 | Alkaloid | GS | low | borderline |
| Sgircontig_9110317440 | Alkaloid | GS | medium | pass |
| Sgircontig_9120318790 | Alkaloid | GS | low | borderline |
| Sgircontig_9280322770 | Alkaloid | GS | low | borderline |
| Sgircontig_9290323280 | Alkaloid | GS | low | borderline |
| Sgircontig_9290323290 | Alkaloid | GS | low | borderline |
| Sgircontig_9420331710 | Alkaloid | GS | medium | pass |
| Sgircontig_9420332560 | Alkaloid | GS | low | borderline |
| Sgircontig_9480337580 | Alkaloid | GS | low | borderline |
| Sgircontig_9670342130 | Alkaloid | GS | low | borderline |