Sphagnum girgensohnii (sphagnum_girgensohnii)
Imported from atlas release summary for Sphagnum girgensohnii.
917
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
917
Candidate Genes
POD
7.79%
BAHD
7.55%
C4H
5.08%
4CL
5.03%
C3'H/CYP98A
4.62%
NMT
4.01%
STR
3.4%
CYP76
2.8%
Other Families
59.72%
More Families (96)
PAL
57
2.66%
T3O
53
2.47%
IFS
51
2.38%
IFR
49
2.28%
GS
48
2.24%
PYKS
48
2.24%
F3H
47
2.19%
CAD
45
2.1%
BR6OX2/CYP85A2
44
2.05%
DWF4/CYP90B1
37
1.72%
F3'H/CYP75B
32
1.49%
CHS
30
1.4%
TRI/TRII
29
1.35%
SMT1/SMT2/SMT3
28
1.31%
CYP71
28
1.31%
UGT
27
1.26%
CODM/T6ODM
26
1.21%
H6H
21
0.98%
T16H
20
0.93%
DFR
19
0.89%
CCR
19
0.89%
RAS
18
0.84%
F3'5'H/CYP75A
17
0.79%
8HGO
16
0.75%
ANR
16
0.75%
CSE
16
0.75%
CAS
16
0.75%
AACT
16
0.75%
SLS
15
0.7%
LAC
15
0.7%
IO
14
0.65%
7DLGT
14
0.65%
HCT
14
0.65%
G8O/G8H
13
0.61%
COMT
13
0.61%
CYP90D1
13
0.61%
7DLH
12
0.56%
UFGT
12
0.56%
SGD
11
0.51%
CPD/CYP90A1
11
0.51%
TPS
11
0.51%
FNS
10
0.47%
ISY
9
0.42%
BR6OX1/CYP85A1
9
0.42%
DXS
9
0.42%
16OMT
8
0.37%
COR
7
0.33%
CPR
7
0.33%
ROT3/CYP90C1
7
0.33%
SMO1/SMO2
7
0.33%
FK
7
0.33%
GGPPS
7
0.33%
CNMT
6
0.28%
MPO
6
0.28%
F5H/CYP84A
6
0.28%
HPPR
6
0.28%
DET2
6
0.28%
MVK
6
0.28%
PMT
5
0.23%
NCS
5
0.23%
TYDC_DDC
5
0.23%
GES
5
0.23%
CCoAOMT
5
0.23%
DWF5
5
0.23%
HDS/IspG
5
0.23%
FPPS
5
0.23%
LAMT
4
0.19%
CYP719
4
0.19%
TDC
4
0.19%
BBE
4
0.19%
SQS/FDFT1
4
0.19%
SQE
4
0.19%
HDR/IspH
4
0.19%
ODC
3
0.14%
FLS
3
0.14%
ANS/LDOX
3
0.14%
TAT
3
0.14%
CYP51G1
3
0.14%
DWF1
3
0.14%
HMGR
3
0.14%
HMGS
3
0.14%
MDS/IspF
3
0.14%
CYP80B1
2
0.09%
6OMT_4OMT_SOMT
2
0.09%
CHI
2
0.09%
DWF7
2
0.09%
HYD1
2
0.09%
CMK/IspE
2
0.09%
MVD
2
0.09%
DXR
2
0.09%
ADC
1
0.05%
XMT_MXMT_DXMT
1
0.05%
CPI1
1
0.05%
IDI
1
0.05%
PMK
1
0.05%
MCT/IspD
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 266 | 12 | POD (158) | View species results |
| Terpenoid pathway | 221 | 20 | BAHD (128) | View species results |
| Alkaloid pathway | 192 | 20 | NMT (35) | View species results |
| Flavonoid pathway | 94 | 10 | CHS (30) | View species results |
| Rosmarinic acid pathway | 86 | 7 | C4H (28) | View species results |
| Steroid pathway | 58 | 13 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 659 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 194 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sgircontig_4220158020 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Sgircontig_4220158250 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Sgircontig_5190190480 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Sgircontig_5290193290 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Sgircontig_5310194960 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Sgircontig_5760216970 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Sgircontig_6110223710 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Sgircontig_6340229820 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Sgircontig_6480233070 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Sgircontig_6530235390 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| Sgircontig_6650236830 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Sgircontig_690247040 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Sgircontig_7130252620 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Sgircontig_7180255660 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Sgircontig_7210257280 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Sgircontig_7280263090 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Sgircontig_7310265380 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Sgircontig_7500274950 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Sgircontig_7760281270 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Sgircontig_7900284170 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Sgircontig_8090289280 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Sgircontig_8610301990 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Sgircontig_9030315820 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Sgircontig_90312960 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Sgircontig_9270322390 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Sgircontig_9330325390 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Sgircontig_9400329750 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Sgircontig_9400329760 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Sgircontig_9430333450 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Sgircontig_9440334530 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Sgircontig_950338300 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Sgircontig_9580339390 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Sgircontig_9730343790 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Sgircontig_9760344600 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Sgircontig_9830346310 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Sgircontig_9890348670 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |