PlantSME Plant secondary metabolism enzyme database

Sphagnum palustre (sphagnum_palustre)

Imported from atlas release summary for Sphagnum palustre.

1110
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.82% Terpenoid pathway 25.41% Alkaloid pathway 20.9% Flavonoid pathway 9.46% Rosmarinic acid pathway 8.65% Steroid pathway 5.77%
Family Distribution
POD 7.78% BAHD 7.66% 4CL 6.45% C3'H/CYP98A 4.81% NMT 4.53% C4H 4.46% STR 3.56% CYP76 3.09%
Other Families 57.66%
More Families (97)
IFS 70 2.74% IFR 62 2.42% GS 60 2.35% T3O 53 2.07% PYKS 49 1.92% F3H 49 1.92% TRI/TRII 47 1.84% DWF4/CYP90B1 43 1.68% CAD 40 1.56% BR6OX2/CYP85A2 40 1.56% F3'H/CYP75B 39 1.52% CSE 33 1.29% UFGT 31 1.21% UGT 31 1.21% H6H 30 1.17% CHS 29 1.13% CODM/T6ODM 28 1.09% CYP71 28 1.09% SMT1/SMT2/SMT3 27 1.06% 7DLGT 26 1.02% COMT 25 0.98% RAS 24 0.94% G8O/G8H 23 0.9% CCR 20 0.78% HCT 19 0.74% CAS 19 0.74% DFR 18 0.7% PAL 18 0.7% 16OMT 17 0.66% 8HGO 17 0.66% T16H 17 0.66% IO 16 0.63% SLS 16 0.63% F3'5'H/CYP75A 16 0.63% LAC 16 0.63% AACT 16 0.63% CYP90D1 15 0.59% 7DLH 14 0.55% ANR 14 0.55% GGPPS 14 0.55% BR6OX1/CYP85A1 13 0.51% CNMT 12 0.47% CPD/CYP90A1 12 0.47% SGD 11 0.43% FNS 11 0.43% DET2 10 0.39% HDS/IspG 10 0.39% PMT 9 0.35% COR 9 0.35% CPR 9 0.35% SQE 9 0.35% FK 9 0.35% ISY 8 0.31% ANS/LDOX 8 0.31% SMO1/SMO2 8 0.31% HMGR 8 0.31% TAT 7 0.27% FPPS 7 0.27% BBE 6 0.23% DWF5 6 0.23% ROT3/CYP90C1 6 0.23% DXS 6 0.23% TPS 6 0.23% ODC 5 0.2% CCoAOMT 5 0.2% HPPR 5 0.2% SQS/FDFT1 5 0.2% CMK/IspE 5 0.2% MVK 5 0.2% MPO 4 0.16% GES 4 0.16% NCS 4 0.16% TYDC_DDC 4 0.16% F5H/CYP84A 4 0.16% DWF1 4 0.16% HDR/IspH 4 0.16% 6OMT_4OMT_SOMT 3 0.12% ADC 3 0.12% CYP80B1 3 0.12% TDC 3 0.12% CPI1 3 0.12% HYD1 3 0.12% MCT/IspD 3 0.12% IDI 3 0.12% MVD 3 0.12% DXR 3 0.12% CYP719 2 0.08% CYP80F1 2 0.08% FLS 2 0.08% CHI 2 0.08% CYP51G1 2 0.08% DWF7 2 0.08% PMK 2 0.08% LAMT 1 0.04% XMT_MXMT_DXMT 1 0.04% HMGS 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 331 11 POD (191) View species results
Terpenoid pathway 282 21 BAHD (162) View species results
Alkaloid pathway 232 18 NMT (49) View species results
Flavonoid pathway 105 9 4CL (29) View species results
Rosmarinic acid pathway 96 7 C4H (30) View species results
Steroid pathway 64 12 CAS (18) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 750 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 239 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ODC
Reset
Gene Pathway Family Confidence Status Best Target
Spal3401890099620 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC
Spal3528520200670 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Spal3543550237480 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC
Spal3548120250030 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Spal3560560290780 Alkaloid ODC medium pass ODC__00001__sp_A0A1S4AUX8_ODC1A_TOBAC