PlantSME Plant secondary metabolism enzyme database

Spirodela polyrhiza (spirodela_polyrhiza)

Imported from atlas release summary for Spirodela polyrhiza.

768
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Phenylpropanoid pathway 22.92% Alkaloid pathway 19.92% Flavonoid pathway 11.59% Rosmarinic acid pathway 9.11% Steroid pathway 5.6%
Family Distribution
BAHD 7.11% C3'H/CYP98A 6.59% C4H 6.23% CYP76 4.53% 4CL 4.17% POD 4.12% IFS 3.76% UGT 3.3%
Other Families 60.2%
More Families (94)
T3O 63 3.24% UFGT 56 2.88% BR6OX2/CYP85A2 56 2.88% 7DLGT 51 2.63% DWF4/CYP90B1 51 2.63% NMT 47 2.42% F3'H/CYP75B 46 2.37% STR 44 2.27% F3H 36 1.85% CSE 34 1.75% G8O/G8H 29 1.49% CAD 26 1.34% TRI/TRII 25 1.29% SMT1/SMT2/SMT3 24 1.24% SLS 23 1.18% IFR 22 1.13% HCT 22 1.13% PYKS 21 1.08% ANR 21 1.08% 8HGO 20 1.03% CCR 19 0.98% RAS 19 0.98% CYP71 19 0.98% FNS 18 0.93% CODM/T6ODM 17 0.88% CAS 17 0.88% TPS 17 0.88% GES 16 0.82% GS 15 0.77% SGD 14 0.72% IO 13 0.67% LAC 13 0.67% CYP90D1 13 0.67% H6H 12 0.62% PMT 11 0.57% CNMT 11 0.57% NCS 10 0.51% COMT 10 0.51% 7DLH 9 0.46% PAL 9 0.46% TYDC_DDC 8 0.41% F3'5'H/CYP75A 8 0.41% BR6OX1/CYP85A1 8 0.41% 16OMT 7 0.36% T16H 7 0.36% CYP80B1 6 0.31% DFR 6 0.31% TAT 6 0.31% CPD/CYP90A1 6 0.31% DET2 6 0.31% TDC 5 0.26% FPPS 5 0.26% BBE 4 0.21% F5H/CYP84A 4 0.21% CPR 4 0.21% SQS/FDFT1 4 0.21% MVD 4 0.21% AACT 4 0.21% MVK 4 0.21% COR 3 0.15% CYP719 3 0.15% CHS 3 0.15% FK 3 0.15% CYP51G1 3 0.15% SMO1/SMO2 3 0.15% LAMT 2 0.1% ADC 2 0.1% ISY 2 0.1% XMT_MXMT_DXMT 2 0.1% ANS/LDOX 2 0.1% CHI 2 0.1% HPPR 2 0.1% ROT3/CYP90C1 2 0.1% DWF7 2 0.1% SQE 2 0.1% HDS/IspG 2 0.1% HMGS 2 0.1% GGPPS 2 0.1% HDR/IspH 2 0.1% PMK 2 0.1% DXS 2 0.1% MCT/IspD 2 0.1% MPO 1 0.05% FLS 1 0.05% CCoAOMT 1 0.05% DWF1 1 0.05% DWF5 1 0.05% CPI1 1 0.05% HYD1 1 0.05% DXR 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% CMK/IspE 1 0.05% IDI 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 237 19 BAHD (102) View species results
Phenylpropanoid pathway 176 11 POD (79) View species results
Alkaloid pathway 153 20 NMT (29) View species results
Flavonoid pathway 89 11 UFGT (48) View species results
Rosmarinic acid pathway 70 7 C4H (29) View species results
Steroid pathway 43 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 779 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 179 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
Spolpseudo130054500.1 Alkaloid CYP719 medium borderline CYP719__00010__sp_Q50LH4_C7193_ESCCA
Spolpseudo20096380.1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
Spolpseudo50164390.1 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE