Spirodela polyrhiza (spirodela_polyrhiza)
Imported from atlas release summary for Spirodela polyrhiza.
768
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
768
Candidate Genes
BAHD
7.11%
C3'H/CYP98A
6.59%
C4H
6.23%
CYP76
4.53%
4CL
4.17%
POD
4.12%
IFS
3.76%
UGT
3.3%
Other Families
60.2%
More Families (94)
T3O
63
3.24%
UFGT
56
2.88%
BR6OX2/CYP85A2
56
2.88%
7DLGT
51
2.63%
DWF4/CYP90B1
51
2.63%
NMT
47
2.42%
F3'H/CYP75B
46
2.37%
STR
44
2.27%
F3H
36
1.85%
CSE
34
1.75%
G8O/G8H
29
1.49%
CAD
26
1.34%
TRI/TRII
25
1.29%
SMT1/SMT2/SMT3
24
1.24%
SLS
23
1.18%
IFR
22
1.13%
HCT
22
1.13%
PYKS
21
1.08%
ANR
21
1.08%
8HGO
20
1.03%
CCR
19
0.98%
RAS
19
0.98%
CYP71
19
0.98%
FNS
18
0.93%
CODM/T6ODM
17
0.88%
CAS
17
0.88%
TPS
17
0.88%
GES
16
0.82%
GS
15
0.77%
SGD
14
0.72%
IO
13
0.67%
LAC
13
0.67%
CYP90D1
13
0.67%
H6H
12
0.62%
PMT
11
0.57%
CNMT
11
0.57%
NCS
10
0.51%
COMT
10
0.51%
7DLH
9
0.46%
PAL
9
0.46%
TYDC_DDC
8
0.41%
F3'5'H/CYP75A
8
0.41%
BR6OX1/CYP85A1
8
0.41%
16OMT
7
0.36%
T16H
7
0.36%
CYP80B1
6
0.31%
DFR
6
0.31%
TAT
6
0.31%
CPD/CYP90A1
6
0.31%
DET2
6
0.31%
TDC
5
0.26%
FPPS
5
0.26%
BBE
4
0.21%
F5H/CYP84A
4
0.21%
CPR
4
0.21%
SQS/FDFT1
4
0.21%
MVD
4
0.21%
AACT
4
0.21%
MVK
4
0.21%
COR
3
0.15%
CYP719
3
0.15%
CHS
3
0.15%
FK
3
0.15%
CYP51G1
3
0.15%
SMO1/SMO2
3
0.15%
LAMT
2
0.1%
ADC
2
0.1%
ISY
2
0.1%
XMT_MXMT_DXMT
2
0.1%
ANS/LDOX
2
0.1%
CHI
2
0.1%
HPPR
2
0.1%
ROT3/CYP90C1
2
0.1%
DWF7
2
0.1%
SQE
2
0.1%
HDS/IspG
2
0.1%
HMGS
2
0.1%
GGPPS
2
0.1%
HDR/IspH
2
0.1%
PMK
2
0.1%
DXS
2
0.1%
MCT/IspD
2
0.1%
MPO
1
0.05%
FLS
1
0.05%
CCoAOMT
1
0.05%
DWF1
1
0.05%
DWF5
1
0.05%
CPI1
1
0.05%
HYD1
1
0.05%
DXR
1
0.05%
MDS/IspF
1
0.05%
HMGR
1
0.05%
CMK/IspE
1
0.05%
IDI
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 237 | 19 | BAHD (102) | View species results |
| Phenylpropanoid pathway | 176 | 11 | POD (79) | View species results |
| Alkaloid pathway | 153 | 20 | NMT (29) | View species results |
| Flavonoid pathway | 89 | 11 | UFGT (48) | View species results |
| Rosmarinic acid pathway | 70 | 7 | C4H (29) | View species results |
| Steroid pathway | 43 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 779 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 179 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Spolpseudo00001260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo00006880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo00008890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo00010330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo00012180.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo100033500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo100033520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo100035820.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo100036270.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo10020930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo10023140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo110038490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo110041280.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo110041290.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo120047230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo120047330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo140056820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo140058930.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo160070410.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo160070420.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo190084640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo210103150.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo220106940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo220106950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo220107230.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo230114220.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo250119210.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo250120720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo250121020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo260121880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo260122840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo270125810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30137970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30138220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30139140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30139160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30139170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo30140600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Spolpseudo50166790.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo50166810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo60174140.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo70178420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo70178460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Spolpseudo90190090.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |