PlantSME Plant secondary metabolism enzyme database

Suaeda aralocaspica (suaeda_aralocaspica)

Imported from atlas release summary for Suaeda aralocaspica.

1027
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.8% Phenylpropanoid pathway 24.34% Alkaloid pathway 19.77% Flavonoid pathway 13.53% Rosmarinic acid pathway 7.69% Steroid pathway 4.87%
Family Distribution
BAHD 6.58% C3'H/CYP98A 5.56% POD 5.29% C4H 5.13% UGT 4.46% 7DLGT 4.23% UFGT 4.15% 4CL 3.88%
Other Families 60.73%
More Families (97)
T3O 90 3.52% IFS 89 3.48% CYP76 84 3.29% NMT 74 2.9% F3H 63 2.47% DWF4/CYP90B1 58 2.27% CODM/T6ODM 45 1.76% F3'H/CYP75B 45 1.76% BR6OX2/CYP85A2 45 1.76% STR 42 1.64% TRI/TRII 37 1.45% SMT1/SMT2/SMT3 35 1.37% HCT 33 1.29% CYP71 32 1.25% COMT 29 1.14% CAD 29 1.14% RAS 29 1.14% H6H 27 1.06% PMT 24 0.94% PYKS 24 0.94% LAC 24 0.94% CSE 22 0.86% IFR 21 0.82% BBE 20 0.78% SGD 20 0.78% T16H 18 0.7% 16OMT 18 0.7% ANR 18 0.7% CYP90D1 18 0.7% CAS 18 0.7% FPPS 18 0.7% SLS 17 0.67% F3'5'H/CYP75A 17 0.67% G8O/G8H 16 0.63% GS 16 0.63% CCR 16 0.63% TPS 14 0.55% GES 13 0.51% BR6OX1/CYP85A1 13 0.51% 7DLH 12 0.47% CYP51G1 12 0.47% CNMT 11 0.43% FNS 11 0.43% CCoAOMT 11 0.43% LAMT 10 0.39% CPD/CYP90A1 10 0.39% 8HGO 9 0.35% IO 9 0.35% COR 9 0.35% F5H/CYP84A 9 0.35% MPO 8 0.31% CHS 8 0.31% DFR 8 0.31% TAT 7 0.27% XMT_MXMT_DXMT 6 0.23% CPR 6 0.23% AACT 6 0.23% CYP80F1 5 0.2% NCS 5 0.2% ANS/LDOX 5 0.2% HPPR 5 0.2% ROT3/CYP90C1 5 0.2% SMO1/SMO2 5 0.2% MVD 5 0.2% ISY 4 0.16% CYP719 4 0.16% CHI 4 0.16% SQS/FDFT1 4 0.16% DWF7 4 0.16% HYD1 4 0.16% HMGR 4 0.16% MVK 4 0.16% GGPPS 4 0.16% TYDC_DDC 3 0.12% TDC 3 0.12% FLS 3 0.12% PAL 3 0.12% DET2 3 0.12% SQE 3 0.12% DWF1 3 0.12% CMK/IspE 3 0.12% DXS 3 0.12% PMK 3 0.12% CYP80B1 2 0.08% HMGS 2 0.08% MCT/IspD 2 0.08% ADC 1 0.04% 6OMT_4OMT_SOMT 1 0.04% DWF5 1 0.04% FK 1 0.04% CPI1 1 0.04% MDS/IspF 1 0.04% IDI 1 0.04% GPPS 1 0.04% DXR 1 0.04% HDR/IspH 1 0.04% HDS/IspG 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 306 19 BAHD (125) View species results
Phenylpropanoid pathway 250 11 POD (122) View species results
Alkaloid pathway 203 17 7DLGT (43) View species results
Flavonoid pathway 139 9 UFGT (96) View species results
Rosmarinic acid pathway 79 7 C4H (30) View species results
Steroid pathway 50 11 SMT1/SMT2/SMT3 (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 883 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 230 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
Suaeda_aralocaspica_GOSA_00000976-RA Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Suaeda_aralocaspica_GOSA_00001437-RA Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Suaeda_aralocaspica_GOSA_00003735-RA Rosmarinic Acid CPR low borderline CPR__00007__sp_Q96327_EBP1_ARATH
Suaeda_aralocaspica_GOSA_00007620-RA Rosmarinic Acid CPR medium pass CPR__00009__sp_Q9SUM3_NCPR2_ARATH
Suaeda_aralocaspica_GOSA_00008491-RA Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI
Suaeda_aralocaspica_GOSA_00017545-RA Rosmarinic Acid CPR medium pass CPR__00003__sp_C5YJG8_NCPR_SORBI