PlantSME Plant secondary metabolism enzyme database

Syntrichia caninervis (syntrichia_caninervis)

Imported from atlas release summary for Syntrichia caninervis.

634
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.81% Terpenoid pathway 26.18% Alkaloid pathway 19.09% Flavonoid pathway 11.67% Rosmarinic acid pathway 10.57% Steroid pathway 5.68%
Family Distribution
C4H 6.59% 4CL 6.22% C3'H/CYP98A 6.1% CYP76 5.3% POD 5.24% BAHD 5.24% F3'H/CYP75B 3.35% NMT 3.23%
Other Families 58.72%
More Families (97)
STR 41 2.5% BR6OX2/CYP85A2 40 2.44% PAL 39 2.38% IFS 38 2.32% T3O 37 2.26% IFR 37 2.26% DWF4/CYP90B1 34 2.07% IO 30 1.83% UGT 28 1.71% GS 27 1.65% PYKS 26 1.59% UFGT 26 1.59% 7DLGT 25 1.52% G8O/G8H 24 1.46% F3H 22 1.34% CYP71 21 1.28% CAD 19 1.16% SGD 16 0.98% F3'5'H/CYP75A 16 0.98% SMT1/SMT2/SMT3 16 0.98% CAS 16 0.98% CODM/T6ODM 15 0.91% CHS 15 0.91% COMT 15 0.91% TRI/TRII 14 0.85% LAC 14 0.85% T16H 13 0.79% SLS 12 0.73% H6H 11 0.67% FNS 11 0.67% CPD/CYP90A1 11 0.67% HCT 10 0.61% CSE 10 0.61% COR 9 0.55% 16OMT 9 0.55% ANR 9 0.55% RAS 9 0.55% CYP90D1 9 0.55% F5H/CYP84A 8 0.49% AACT 8 0.49% NCS 7 0.43% SQS/FDFT1 7 0.43% PMT 6 0.37% BBE 6 0.37% TDC 6 0.37% DFR 6 0.37% 7DLH 5 0.3% CNMT 5 0.3% 8HGO 5 0.3% LAMT 5 0.3% CPR 5 0.3% BR6OX1/CYP85A1 5 0.3% DET2 5 0.3% GGPPS 5 0.3% MVK 5 0.3% CHI 4 0.24% CCR 4 0.24% CCoAOMT 4 0.24% TAT 4 0.24% SQE 4 0.24% CYP80B1 3 0.18% MPO 3 0.18% CYP719 3 0.18% XMT_MXMT_DXMT 3 0.18% TYDC_DDC 3 0.18% ANS/LDOX 3 0.18% CYP51G1 3 0.18% DWF5 3 0.18% DXS 3 0.18% MVD 3 0.18% MCT/IspD 3 0.18% ADC 2 0.12% GES 2 0.12% ROT3/CYP90C1 2 0.12% HYD1 2 0.12% SMO1/SMO2 2 0.12% HDS/IspG 2 0.12% HDR/IspH 2 0.12% DXR 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% TPS 2 0.12% ISY 1 0.06% CYP80F1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% FLS 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF7 1 0.06% DWF1 1 0.06% FK 1 0.06% HMGR 1 0.06% CMK/IspE 1 0.06% GPPS 1 0.06% IDI 1 0.06% HMGS 1 0.06% PMK 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 170 11 POD (83) View species results
Terpenoid pathway 166 20 BAHD (65) View species results
Alkaloid pathway 121 18 NMT (21) View species results
Flavonoid pathway 74 11 UFGT (23) View species results
Rosmarinic acid pathway 67 7 C4H (23) View species results
Steroid pathway 36 13 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 665 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 105 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPR
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Gene Pathway Family Confidence Status Best Target
Scan01G0008980.1 Rosmarinic Acid CPR medium pass CPR__00007__sp_Q96327_EBP1_ARATH
Scan04G0011080.1 Rosmarinic Acid CPR medium pass CPR__00008__sp_Q9SB48_NCPR1_ARATH
Scan09G0015280.1 Rosmarinic Acid CPR medium pass CPR__00004__sp_Q0J705_NCPR2_ORYSJ
Scan11G0003460.1 Rosmarinic Acid CPR medium pass CPR__00002__sp_A0A7T9QPQ1_CPR_PIPNI
Scan11G0014180.1 Rosmarinic Acid CPR low borderline CPR__00003__sp_C5YJG8_NCPR_SORBI