Syntrichia caninervis (syntrichia_caninervis)
Imported from atlas release summary for Syntrichia caninervis.
634
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
634
Candidate Genes
C4H
6.59%
4CL
6.22%
C3'H/CYP98A
6.1%
CYP76
5.3%
POD
5.24%
BAHD
5.24%
F3'H/CYP75B
3.35%
NMT
3.23%
Other Families
58.72%
More Families (97)
STR
41
2.5%
BR6OX2/CYP85A2
40
2.44%
PAL
39
2.38%
IFS
38
2.32%
T3O
37
2.26%
IFR
37
2.26%
DWF4/CYP90B1
34
2.07%
IO
30
1.83%
UGT
28
1.71%
GS
27
1.65%
PYKS
26
1.59%
UFGT
26
1.59%
7DLGT
25
1.52%
G8O/G8H
24
1.46%
F3H
22
1.34%
CYP71
21
1.28%
CAD
19
1.16%
SGD
16
0.98%
F3'5'H/CYP75A
16
0.98%
SMT1/SMT2/SMT3
16
0.98%
CAS
16
0.98%
CODM/T6ODM
15
0.91%
CHS
15
0.91%
COMT
15
0.91%
TRI/TRII
14
0.85%
LAC
14
0.85%
T16H
13
0.79%
SLS
12
0.73%
H6H
11
0.67%
FNS
11
0.67%
CPD/CYP90A1
11
0.67%
HCT
10
0.61%
CSE
10
0.61%
COR
9
0.55%
16OMT
9
0.55%
ANR
9
0.55%
RAS
9
0.55%
CYP90D1
9
0.55%
F5H/CYP84A
8
0.49%
AACT
8
0.49%
NCS
7
0.43%
SQS/FDFT1
7
0.43%
PMT
6
0.37%
BBE
6
0.37%
TDC
6
0.37%
DFR
6
0.37%
7DLH
5
0.3%
CNMT
5
0.3%
8HGO
5
0.3%
LAMT
5
0.3%
CPR
5
0.3%
BR6OX1/CYP85A1
5
0.3%
DET2
5
0.3%
GGPPS
5
0.3%
MVK
5
0.3%
CHI
4
0.24%
CCR
4
0.24%
CCoAOMT
4
0.24%
TAT
4
0.24%
SQE
4
0.24%
CYP80B1
3
0.18%
MPO
3
0.18%
CYP719
3
0.18%
XMT_MXMT_DXMT
3
0.18%
TYDC_DDC
3
0.18%
ANS/LDOX
3
0.18%
CYP51G1
3
0.18%
DWF5
3
0.18%
DXS
3
0.18%
MVD
3
0.18%
MCT/IspD
3
0.18%
ADC
2
0.12%
GES
2
0.12%
ROT3/CYP90C1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
HDS/IspG
2
0.12%
HDR/IspH
2
0.12%
DXR
2
0.12%
FPPS
2
0.12%
MDS/IspF
2
0.12%
TPS
2
0.12%
ISY
1
0.06%
CYP80F1
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
FLS
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
FK
1
0.06%
HMGR
1
0.06%
CMK/IspE
1
0.06%
GPPS
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
PMK
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 170 | 11 | POD (83) | View species results |
| Terpenoid pathway | 166 | 20 | BAHD (65) | View species results |
| Alkaloid pathway | 121 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 74 | 11 | UFGT (23) | View species results |
| Rosmarinic acid pathway | 67 | 7 | C4H (23) | View species results |
| Steroid pathway | 36 | 13 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 665 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 105 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Scan01G0002140.1 | Alkaloid | IO | medium | borderline |
| Scan01G0003270.1 | Alkaloid | IO | medium | borderline |
| Scan01G0005320.1 | Alkaloid | IO | medium | borderline |
| Scan01G0005750.1 | Alkaloid | IO | medium | borderline |
| Scan01G0006930.1 | Alkaloid | IO | medium | borderline |
| Scan01G0009290.1 | Alkaloid | IO | low | borderline |
| Scan02G0006520.1 | Alkaloid | IO | medium | borderline |
| Scan03G0006270.1 | Alkaloid | IO | medium | borderline |
| Scan03G0006380.1 | Alkaloid | IO | medium | borderline |
| Scan04G0007520.1 | Alkaloid | IO | medium | borderline |
| Scan05G0002220.1 | Alkaloid | IO | medium | borderline |
| Scan05G0005140.1 | Alkaloid | IO | medium | borderline |
| Scan05G0009230.1 | Alkaloid | IO | medium | pass |
| Scan07G0004880.1 | Alkaloid | IO | medium | borderline |
| Scan07G0006080.1 | Alkaloid | IO | high | pass |
| Scan07G0006150.1 | Alkaloid | IO | medium | borderline |
| Scan08G0001120.1 | Alkaloid | IO | medium | borderline |
| Scan08G0002290.1 | Alkaloid | IO | medium | borderline |
| Scan08G0002420.1 | Alkaloid | IO | medium | borderline |
| Scan08G0002480.2 | Alkaloid | IO | medium | borderline |
| Scan09G0015550.1 | Alkaloid | IO | medium | borderline |
| Scan10G0012250.1 | Alkaloid | IO | medium | borderline |
| Scan11G0002970.1 | Alkaloid | IO | medium | borderline |
| Scan11G0006890.1 | Alkaloid | IO | medium | borderline |
| Scan11G0010710.1 | Alkaloid | IO | medium | borderline |
| Scan11G0014010.1 | Alkaloid | IO | high | pass |
| Scan12G0000260.1 | Alkaloid | IO | medium | borderline |
| Scan12G0014920.1 | Alkaloid | IO | medium | borderline |
| Scan12G0019220.1 | Alkaloid | IO | medium | borderline |
| Scan13G0001410.1 | Alkaloid | IO | medium | pass |