Syntrichia caninervis (syntrichia_caninervis)
Imported from atlas release summary for Syntrichia caninervis.
863
Candidate Protein Records
634
Pathway-Level Records
1640
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1640
Family-Level Calls
C4H
6.59%
4CL
6.22%
C3'H/CYP98A
6.1%
CYP76
5.3%
POD
5.24%
BAHD
5.24%
F3'H/CYP75B
3.35%
NMT
3.23%
Other Families
58.72%
More Families (97)
STR
41
2.5%
BR6OX2/CYP85A2
40
2.44%
PAL
39
2.38%
IFS
38
2.32%
T3O
37
2.26%
IFR
37
2.26%
DWF4/CYP90B1
34
2.07%
IO
30
1.83%
UGT
28
1.71%
GS
27
1.65%
PYKS
26
1.59%
UFGT
26
1.59%
7DLGT
25
1.52%
G8O/G8H
24
1.46%
F3H
22
1.34%
CYP71
21
1.28%
CAD
19
1.16%
SGD
16
0.98%
F3'5'H/CYP75A
16
0.98%
SMT1/SMT2/SMT3
16
0.98%
CAS
16
0.98%
CODM/T6ODM
15
0.91%
CHS
15
0.91%
COMT
15
0.91%
TRI/TRII
14
0.85%
LAC
14
0.85%
T16H
13
0.79%
SLS
12
0.73%
H6H
11
0.67%
FNS
11
0.67%
CPD/CYP90A1
11
0.67%
HCT
10
0.61%
CSE
10
0.61%
COR
9
0.55%
16OMT
9
0.55%
ANR
9
0.55%
RAS
9
0.55%
CYP90D1
9
0.55%
F5H/CYP84A
8
0.49%
AACT
8
0.49%
NCS
7
0.43%
SQS/FDFT1
7
0.43%
PMT
6
0.37%
BBE
6
0.37%
TDC
6
0.37%
DFR
6
0.37%
7DLH
5
0.3%
CNMT
5
0.3%
8HGO
5
0.3%
LAMT
5
0.3%
CPR
5
0.3%
BR6OX1/CYP85A1
5
0.3%
DET2
5
0.3%
GGPPS
5
0.3%
MVK
5
0.3%
CHI
4
0.24%
CCR
4
0.24%
CCoAOMT
4
0.24%
TAT
4
0.24%
SQE
4
0.24%
CYP80B1
3
0.18%
MPO
3
0.18%
CYP719
3
0.18%
XMT_MXMT_DXMT
3
0.18%
TYDC_DDC
3
0.18%
ANS/LDOX
3
0.18%
CYP51G1
3
0.18%
DWF5
3
0.18%
DXS
3
0.18%
MVD
3
0.18%
MCT/IspD
3
0.18%
ADC
2
0.12%
GES
2
0.12%
ROT3/CYP90C1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
HDS/IspG
2
0.12%
HDR/IspH
2
0.12%
DXR
2
0.12%
FPPS
2
0.12%
MDS/IspF
2
0.12%
TPS
2
0.12%
ISY
1
0.06%
CYP80F1
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
FLS
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
DWF1
1
0.06%
FK
1
0.06%
HMGR
1
0.06%
CMK/IspE
1
0.06%
GPPS
1
0.06%
IDI
1
0.06%
HMGS
1
0.06%
PMK
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 170 | 11 | POD (83) | View species results |
| Terpenoid pathway | 166 | 20 | BAHD (65) | View species results |
| Alkaloid pathway | 121 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 74 | 11 | UFGT (23) | View species results |
| Rosmarinic acid pathway | 67 | 7 | C4H (23) | View species results |
| Steroid pathway | 36 | 13 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 665 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 105 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Scan12G0001290.1 | Alkaloid | T3O | low | borderline |
| Scan12G0012660.1 | Alkaloid | T3O | medium | borderline |
| Scan12G0019500.1 | Alkaloid | T3O | medium | borderline |
| Scan07G0000170.1 | Alkaloid | TDC | low | borderline |
| Scan08G0002840.1 | Alkaloid | TDC | low | borderline |
| Scan10G0013240.1 | Alkaloid | TDC | medium | borderline |
| Scan10G0014260.1 | Alkaloid | TDC | low | borderline |
| Scan12G0005720.1 | Alkaloid | TDC | low | borderline |
| Scan12G0009150.1 | Alkaloid | TDC | low | borderline |
| Scan01G0000070.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan03G0006990.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan03G0007020.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan04G0009950.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan05G0007240.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan06G0001550.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan06G0005980.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan06G0012000.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan07G0006670.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan09G0007330.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan10G0014190.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan11G0014190.1 | Alkaloid | TRI/TRII | low | borderline |
| Scan11G0016080.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan12G0017250.1 | Alkaloid | TRI/TRII | medium | pass |
| Scan09G0003530.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Scan10G0013220.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Scan12G0004160.1 | Alkaloid | TYDC_DDC | medium | borderline |
| Scan08G0010730.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Scan08G0010780.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Scan11G0005560.1 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Scan01G0009680.1 | Flavonoid | 4CL | low | borderline |
| Scan02G0006680.1 | Flavonoid | 4CL | low | borderline |
| Scan02G0007170.1 | Flavonoid | 4CL | medium | pass |
| Scan02G0010170.1 | Flavonoid | 4CL | medium | pass |
| Scan03G0004550.1 | Flavonoid | 4CL | low | borderline |
| Scan03G0008790.1 | Flavonoid | 4CL | medium | pass |
| Scan03G0011010.1 | Flavonoid | 4CL | low | borderline |
| Scan04G0009980.1 | Flavonoid | 4CL | low | borderline |
| Scan06G0002320.1 | Flavonoid | 4CL | low | borderline |
| Scan06G0008380.1 | Flavonoid | 4CL | medium | pass |
| Scan06G0009480.1 | Flavonoid | 4CL | medium | pass |
| Scan06G0011130.1 | Flavonoid | 4CL | medium | pass |
| Scan07G0002090.1 | Flavonoid | 4CL | medium | pass |
| Scan08G0010550.1 | Flavonoid | 4CL | low | borderline |
| Scan08G0010550.2 | Flavonoid | 4CL | low | borderline |
| Scan09G0001560.1 | Flavonoid | 4CL | low | borderline |
| Scan09G0008190.1 | Flavonoid | 4CL | medium | pass |
| Scan10G0010800.2 | Flavonoid | 4CL | low | borderline |
| Scan10G0010800.3 | Flavonoid | 4CL | low | borderline |
| Scan10G0013600.1 | Flavonoid | 4CL | medium | pass |
| Scan10G0013600.2 | Flavonoid | 4CL | medium | pass |