PlantSME Plant secondary metabolism enzyme database

Syzygium aromaticum (syzygium_aromaticum)

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Imported from atlas release summary for Syzygium aromaticum.

1720
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.88% Alkaloid pathway 22.03% Phenylpropanoid pathway 20.06% Flavonoid pathway 15.23% Rosmarinic acid pathway 7.27% Steroid pathway 5.52%
Family Distribution
C4H 6.23% C3'H/CYP98A 5.71% BAHD 5.31% UGT 5.21% 7DLGT 4.74% UFGT 4.31% IFS 3.96% CYP76 3.84%
Other Families 60.71%
More Families (96)
F3H 132 3.13% T3O 130 3.08% POD 129 3.06% 4CL 114 2.7% DWF4/CYP90B1 106 2.51% CODM/T6ODM 92 2.18% F3'H/CYP75B 86 2.04% CAD 81 1.92% NMT 76 1.8% SMT1/SMT2/SMT3 70 1.66% STR 68 1.61% BR6OX2/CYP85A2 65 1.54% LAC 62 1.47% H6H 58 1.37% COMT 50 1.18% IFR 47 1.11% CAS 46 1.09% TRI/TRII 44 1.04% TPS 44 1.04% CYP71 43 1.02% IO 42 0.99% GS 42 0.99% G8O/G8H 41 0.97% GES 41 0.97% HCT 36 0.85% CSE 35 0.83% CYP90D1 34 0.81% ANR 32 0.76% SGD 31 0.73% 7DLH 29 0.69% F3'5'H/CYP75A 29 0.69% COR 28 0.66% NCS 27 0.64% PMT 27 0.64% T16H 27 0.64% PYKS 27 0.64% 16OMT 26 0.62% TAT 26 0.62% RAS 26 0.62% PAL 24 0.57% BR6OX1/CYP85A1 24 0.57% SLS 23 0.54% 8HGO 22 0.52% F5H/CYP84A 22 0.52% CPD/CYP90A1 20 0.47% BBE 19 0.45% CCR 19 0.45% ANS/LDOX 15 0.36% CYP51G1 15 0.36% CCoAOMT 14 0.33% ROT3/CYP90C1 14 0.33% FNS 13 0.31% DFR 12 0.28% LAMT 11 0.26% CHS 10 0.24% SQE 10 0.24% CYP719 7 0.17% MPO 7 0.17% CHI 7 0.17% GGPPS 7 0.17% CNMT 6 0.14% HPPR 6 0.14% SQS/FDFT1 6 0.14% HMGR 6 0.14% TYDC_DDC 5 0.12% AACT 5 0.12% FPPS 5 0.12% 6OMT_4OMT_SOMT 4 0.09% CPR 4 0.09% MCT/IspD 4 0.09% IDI 4 0.09% MVD 4 0.09% TDC 3 0.07% DET2 3 0.07% SMO1/SMO2 3 0.07% MVK 3 0.07% DXS 3 0.07% XMT_MXMT_DXMT 2 0.05% CYP80B1 2 0.05% FLS 2 0.05% HDR/IspH 2 0.05% HMGS 2 0.05% PMK 2 0.05% ISY 1 0.02% ADC 1 0.02% CYP80F1 1 0.02% FK 1 0.02% DWF5 1 0.02% DWF1 1 0.02% DWF7 1 0.02% HYD1 1 0.02% CPI1 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 514 19 UGT (200) View species results
Alkaloid pathway 379 22 7DLGT (96) View species results
Phenylpropanoid pathway 345 11 POD (124) View species results
Flavonoid pathway 262 11 UFGT (171) View species results
Rosmarinic acid pathway 125 7 C4H (54) View species results
Steroid pathway 95 13 SMT1/SMT2/SMT3 (41) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1593 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 286 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
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Gene Pathway Family Confidence Status Best Target
syzygium_aromaticum_saro012430-1.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
syzygium_aromaticum_saro013299-1.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
syzygium_aromaticum_saro020798-1.1 Steroid SQE medium pass SQE__00004__sp_Q8VYH2_ERG16_ARATH
syzygium_aromaticum_saro021035-1.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
syzygium_aromaticum_saro021038-1.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
syzygium_aromaticum_saro021039-1.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
syzygium_aromaticum_saro021040-1.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
syzygium_aromaticum_saro022057-1.1 Steroid SQE low borderline SQE__00005__sp_Q9SM02_ERG14_ARATH
syzygium_aromaticum_saro022409-1.1 Steroid SQE medium pass SQE__00001__sp_B7TWW5_SQE2_PANGI
syzygium_aromaticum_saro024850-1.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI