Syzygium aromaticum (syzygium_aromaticum)
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Imported from atlas release summary for Syzygium aromaticum.
1720
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1720
Candidate Genes
C4H
6.23%
C3'H/CYP98A
5.71%
BAHD
5.31%
UGT
5.21%
7DLGT
4.74%
UFGT
4.31%
IFS
3.96%
CYP76
3.84%
Other Families
60.71%
More Families (96)
F3H
132
3.13%
T3O
130
3.08%
POD
129
3.06%
4CL
114
2.7%
DWF4/CYP90B1
106
2.51%
CODM/T6ODM
92
2.18%
F3'H/CYP75B
86
2.04%
CAD
81
1.92%
NMT
76
1.8%
SMT1/SMT2/SMT3
70
1.66%
STR
68
1.61%
BR6OX2/CYP85A2
65
1.54%
LAC
62
1.47%
H6H
58
1.37%
COMT
50
1.18%
IFR
47
1.11%
CAS
46
1.09%
TRI/TRII
44
1.04%
TPS
44
1.04%
CYP71
43
1.02%
IO
42
0.99%
GS
42
0.99%
G8O/G8H
41
0.97%
GES
41
0.97%
HCT
36
0.85%
CSE
35
0.83%
CYP90D1
34
0.81%
ANR
32
0.76%
SGD
31
0.73%
7DLH
29
0.69%
F3'5'H/CYP75A
29
0.69%
COR
28
0.66%
NCS
27
0.64%
PMT
27
0.64%
T16H
27
0.64%
PYKS
27
0.64%
16OMT
26
0.62%
TAT
26
0.62%
RAS
26
0.62%
PAL
24
0.57%
BR6OX1/CYP85A1
24
0.57%
SLS
23
0.54%
8HGO
22
0.52%
F5H/CYP84A
22
0.52%
CPD/CYP90A1
20
0.47%
BBE
19
0.45%
CCR
19
0.45%
ANS/LDOX
15
0.36%
CYP51G1
15
0.36%
CCoAOMT
14
0.33%
ROT3/CYP90C1
14
0.33%
FNS
13
0.31%
DFR
12
0.28%
LAMT
11
0.26%
CHS
10
0.24%
SQE
10
0.24%
CYP719
7
0.17%
MPO
7
0.17%
CHI
7
0.17%
GGPPS
7
0.17%
CNMT
6
0.14%
HPPR
6
0.14%
SQS/FDFT1
6
0.14%
HMGR
6
0.14%
TYDC_DDC
5
0.12%
AACT
5
0.12%
FPPS
5
0.12%
6OMT_4OMT_SOMT
4
0.09%
CPR
4
0.09%
MCT/IspD
4
0.09%
IDI
4
0.09%
MVD
4
0.09%
TDC
3
0.07%
DET2
3
0.07%
SMO1/SMO2
3
0.07%
MVK
3
0.07%
DXS
3
0.07%
XMT_MXMT_DXMT
2
0.05%
CYP80B1
2
0.05%
FLS
2
0.05%
HDR/IspH
2
0.05%
HMGS
2
0.05%
PMK
2
0.05%
ISY
1
0.02%
ADC
1
0.02%
CYP80F1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 514 | 19 | UGT (200) | View species results |
| Alkaloid pathway | 379 | 22 | 7DLGT (96) | View species results |
| Phenylpropanoid pathway | 345 | 11 | POD (124) | View species results |
| Flavonoid pathway | 262 | 11 | UFGT (171) | View species results |
| Rosmarinic acid pathway | 125 | 7 | C4H (54) | View species results |
| Steroid pathway | 95 | 13 | SMT1/SMT2/SMT3 (41) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1593 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 286 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| syzygium_aromaticum_saro000428-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro000503-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro001884-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro001886-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro002382-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro002384-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro003469-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| syzygium_aromaticum_saro004824-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| syzygium_aromaticum_saro004993-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| syzygium_aromaticum_saro007404-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro007489-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro007490-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro007491-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro007492-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro007541-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| syzygium_aromaticum_saro008733-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| syzygium_aromaticum_saro011472-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| syzygium_aromaticum_saro015213-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro015980-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| syzygium_aromaticum_saro016370-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro016898-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| syzygium_aromaticum_saro017152-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| syzygium_aromaticum_saro017405-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro017800-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro017802-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro018222-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro020123-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| syzygium_aromaticum_saro020699-1.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro020976-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro021913-1.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro022598-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| syzygium_aromaticum_saro024136-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| syzygium_aromaticum_saro024137-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| syzygium_aromaticum_saro024139-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| syzygium_aromaticum_saro024141-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| syzygium_aromaticum_saro025732-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro025908-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| syzygium_aromaticum_saro025909-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| syzygium_aromaticum_saro025960-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro026584-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| syzygium_aromaticum_saro026698-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro026981-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| syzygium_aromaticum_saro027097-1.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| syzygium_aromaticum_saro027422-1.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |