PlantSME Plant secondary metabolism enzyme database

Tamarix chinensis (tamarix_chinensis)

Imported from atlas release summary for Tamarix chinensis.

836
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.03% Phenylpropanoid pathway 25.0% Alkaloid pathway 21.77% Flavonoid pathway 12.68% Rosmarinic acid pathway 7.06% Steroid pathway 6.46%
Family Distribution
BAHD 6.7% C3'H/CYP98A 5.47% POD 5.16% C4H 5.11% 4CL 4.33% IFS 3.66% NMT 3.3% 7DLGT 3.3%
Other Families 62.97%
More Families (95)
UFGT 64 3.3% UGT 64 3.3% CYP76 63 3.25% T3O 56 2.89% F3H 52 2.68% DWF4/CYP90B1 49 2.53% STR 44 2.27% SMT1/SMT2/SMT3 35 1.81% LAC 31 1.6% CAD 30 1.55% TRI/TRII 28 1.44% PYKS 27 1.39% IFR 27 1.39% H6H 26 1.34% CODM/T6ODM 26 1.34% F3'H/CYP75B 26 1.34% BR6OX2/CYP85A2 23 1.19% CSE 22 1.13% CAS 21 1.08% COMT 20 1.03% ANR 19 0.98% GS 18 0.93% HCT 17 0.88% CYP71 17 0.88% GES 16 0.83% G8O/G8H 16 0.83% RAS 16 0.83% CYP90D1 16 0.83% TPS 16 0.83% T16H 15 0.77% PMT 15 0.77% 7DLH 15 0.77% F3'5'H/CYP75A 15 0.77% CCR 13 0.67% TAT 13 0.67% SLS 12 0.62% CPD/CYP90A1 11 0.57% 8HGO 10 0.52% IO 9 0.46% SGD 9 0.46% 16OMT 9 0.46% CHS 9 0.46% PAL 9 0.46% CCoAOMT 9 0.46% NCS 7 0.36% BBE 7 0.36% CPR 7 0.36% TYDC_DDC 6 0.31% LAMT 6 0.31% COR 6 0.31% ANS/LDOX 6 0.31% CYP51G1 6 0.31% AACT 6 0.31% CNMT 5 0.26% BR6OX1/CYP85A1 5 0.26% GGPPS 5 0.26% ISY 4 0.21% FNS 4 0.21% DFR 4 0.21% F5H/CYP84A 4 0.21% HPPR 4 0.21% SMO1/SMO2 4 0.21% ROT3/CYP90C1 4 0.21% DET2 4 0.21% MVK 4 0.21% FPPS 4 0.21% MVD 4 0.21% HMGR 4 0.21% MPO 3 0.15% DWF1 3 0.15% SQS/FDFT1 3 0.15% DXS 3 0.15% PMK 3 0.15% CHI 2 0.1% SQE 2 0.1% DWF7 2 0.1% CMK/IspE 2 0.1% MCT/IspD 2 0.1% HDR/IspH 2 0.1% CYP80B1 1 0.05% TDC 1 0.05% CYP719 1 0.05% 6OMT_4OMT_SOMT 1 0.05% ADC 1 0.05% ODC 1 0.05% FLS 1 0.05% HYD1 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% IDI 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 226 19 BAHD (101) View species results
Phenylpropanoid pathway 209 12 POD (98) View species results
Alkaloid pathway 182 17 NMT (34) View species results
Flavonoid pathway 106 10 UFGT (61) View species results
Rosmarinic acid pathway 59 7 C4H (17) View species results
Steroid pathway 54 11 SMT1/SMT2/SMT3 (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 640 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 163 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status Best Target
tamarix_chinensis_TC04G2617T1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
tamarix_chinensis_TC10G0762T1 Alkaloid ISY medium pass ISY__00004__sp_A0A221J5W8_ISY1_NEPCA
tamarix_chinensis_TC10G2386T1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
tamarix_chinensis_TC11G1191T1 Alkaloid ISY medium pass ISY__00008__sp_K7WDL7_IRIS_CATRO