Tamarix chinensis (tamarix_chinensis)
Imported from atlas release summary for Tamarix chinensis.
836
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
836
Candidate Genes
BAHD
6.7%
C3'H/CYP98A
5.47%
POD
5.16%
C4H
5.11%
4CL
4.33%
IFS
3.66%
NMT
3.3%
7DLGT
3.3%
Other Families
62.97%
More Families (95)
UFGT
64
3.3%
UGT
64
3.3%
CYP76
63
3.25%
T3O
56
2.89%
F3H
52
2.68%
DWF4/CYP90B1
49
2.53%
STR
44
2.27%
SMT1/SMT2/SMT3
35
1.81%
LAC
31
1.6%
CAD
30
1.55%
TRI/TRII
28
1.44%
PYKS
27
1.39%
IFR
27
1.39%
H6H
26
1.34%
CODM/T6ODM
26
1.34%
F3'H/CYP75B
26
1.34%
BR6OX2/CYP85A2
23
1.19%
CSE
22
1.13%
CAS
21
1.08%
COMT
20
1.03%
ANR
19
0.98%
GS
18
0.93%
HCT
17
0.88%
CYP71
17
0.88%
GES
16
0.83%
G8O/G8H
16
0.83%
RAS
16
0.83%
CYP90D1
16
0.83%
TPS
16
0.83%
T16H
15
0.77%
PMT
15
0.77%
7DLH
15
0.77%
F3'5'H/CYP75A
15
0.77%
CCR
13
0.67%
TAT
13
0.67%
SLS
12
0.62%
CPD/CYP90A1
11
0.57%
8HGO
10
0.52%
IO
9
0.46%
SGD
9
0.46%
16OMT
9
0.46%
CHS
9
0.46%
PAL
9
0.46%
CCoAOMT
9
0.46%
NCS
7
0.36%
BBE
7
0.36%
CPR
7
0.36%
TYDC_DDC
6
0.31%
LAMT
6
0.31%
COR
6
0.31%
ANS/LDOX
6
0.31%
CYP51G1
6
0.31%
AACT
6
0.31%
CNMT
5
0.26%
BR6OX1/CYP85A1
5
0.26%
GGPPS
5
0.26%
ISY
4
0.21%
FNS
4
0.21%
DFR
4
0.21%
F5H/CYP84A
4
0.21%
HPPR
4
0.21%
SMO1/SMO2
4
0.21%
ROT3/CYP90C1
4
0.21%
DET2
4
0.21%
MVK
4
0.21%
FPPS
4
0.21%
MVD
4
0.21%
HMGR
4
0.21%
MPO
3
0.15%
DWF1
3
0.15%
SQS/FDFT1
3
0.15%
DXS
3
0.15%
PMK
3
0.15%
CHI
2
0.1%
SQE
2
0.1%
DWF7
2
0.1%
CMK/IspE
2
0.1%
MCT/IspD
2
0.1%
HDR/IspH
2
0.1%
CYP80B1
1
0.05%
TDC
1
0.05%
CYP719
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
ADC
1
0.05%
ODC
1
0.05%
FLS
1
0.05%
HYD1
1
0.05%
FK
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
HMGS
1
0.05%
IDI
1
0.05%
DXR
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 226 | 19 | BAHD (101) | View species results |
| Phenylpropanoid pathway | 209 | 12 | POD (98) | View species results |
| Alkaloid pathway | 182 | 17 | NMT (34) | View species results |
| Flavonoid pathway | 106 | 10 | UFGT (61) | View species results |
| Rosmarinic acid pathway | 59 | 7 | C4H (17) | View species results |
| Steroid pathway | 54 | 11 | SMT1/SMT2/SMT3 (21) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 640 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 163 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| tamarix_chinensis_TC01G3400T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC02G0678T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC02G1377T1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| tamarix_chinensis_TC02G2111T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC02G2289T1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC02G2671T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| tamarix_chinensis_TC03G1706T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC04G0452T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| tamarix_chinensis_TC07G0490T1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| tamarix_chinensis_TC07G0755T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC07G0979T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC07G1097T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC07G1098T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC07G1103T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC07G1105T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC07G1107T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC07G2835T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC08G0163T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| tamarix_chinensis_TC08G0852T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| tamarix_chinensis_TC09G0818T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC09G0876T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| tamarix_chinensis_TC10G2021T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC11G0131T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| tamarix_chinensis_TC11G0857T1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| tamarix_chinensis_TC11G1107T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| tamarix_chinensis_TC11G1109T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| tamarix_chinensis_TC11G2360T1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| tamarix_chinensis_TC12G1991T1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |