PlantSME Plant secondary metabolism enzyme database

Tamarix chinensis (tamarix_chinensis)

Imported from atlas release summary for Tamarix chinensis.

836
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.03% Phenylpropanoid pathway 25.0% Alkaloid pathway 21.77% Flavonoid pathway 12.68% Rosmarinic acid pathway 7.06% Steroid pathway 6.46%
Family Distribution
BAHD 6.7% C3'H/CYP98A 5.47% POD 5.16% C4H 5.11% 4CL 4.33% IFS 3.66% NMT 3.3% 7DLGT 3.3%
Other Families 62.97%
More Families (95)
UFGT 64 3.3% UGT 64 3.3% CYP76 63 3.25% T3O 56 2.89% F3H 52 2.68% DWF4/CYP90B1 49 2.53% STR 44 2.27% SMT1/SMT2/SMT3 35 1.81% LAC 31 1.6% CAD 30 1.55% TRI/TRII 28 1.44% PYKS 27 1.39% IFR 27 1.39% H6H 26 1.34% CODM/T6ODM 26 1.34% F3'H/CYP75B 26 1.34% BR6OX2/CYP85A2 23 1.19% CSE 22 1.13% CAS 21 1.08% COMT 20 1.03% ANR 19 0.98% GS 18 0.93% HCT 17 0.88% CYP71 17 0.88% GES 16 0.83% G8O/G8H 16 0.83% RAS 16 0.83% CYP90D1 16 0.83% TPS 16 0.83% T16H 15 0.77% PMT 15 0.77% 7DLH 15 0.77% F3'5'H/CYP75A 15 0.77% CCR 13 0.67% TAT 13 0.67% SLS 12 0.62% CPD/CYP90A1 11 0.57% 8HGO 10 0.52% IO 9 0.46% SGD 9 0.46% 16OMT 9 0.46% CHS 9 0.46% PAL 9 0.46% CCoAOMT 9 0.46% NCS 7 0.36% BBE 7 0.36% CPR 7 0.36% TYDC_DDC 6 0.31% LAMT 6 0.31% COR 6 0.31% ANS/LDOX 6 0.31% CYP51G1 6 0.31% AACT 6 0.31% CNMT 5 0.26% BR6OX1/CYP85A1 5 0.26% GGPPS 5 0.26% ISY 4 0.21% FNS 4 0.21% DFR 4 0.21% F5H/CYP84A 4 0.21% HPPR 4 0.21% SMO1/SMO2 4 0.21% ROT3/CYP90C1 4 0.21% DET2 4 0.21% MVK 4 0.21% FPPS 4 0.21% MVD 4 0.21% HMGR 4 0.21% MPO 3 0.15% DWF1 3 0.15% SQS/FDFT1 3 0.15% DXS 3 0.15% PMK 3 0.15% CHI 2 0.1% SQE 2 0.1% DWF7 2 0.1% CMK/IspE 2 0.1% MCT/IspD 2 0.1% HDR/IspH 2 0.1% CYP80B1 1 0.05% TDC 1 0.05% CYP719 1 0.05% 6OMT_4OMT_SOMT 1 0.05% ADC 1 0.05% ODC 1 0.05% FLS 1 0.05% HYD1 1 0.05% FK 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% IDI 1 0.05% DXR 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 226 19 BAHD (101) View species results
Phenylpropanoid pathway 209 12 POD (98) View species results
Alkaloid pathway 182 17 NMT (34) View species results
Flavonoid pathway 106 10 UFGT (61) View species results
Rosmarinic acid pathway 59 7 C4H (17) View species results
Steroid pathway 54 11 SMT1/SMT2/SMT3 (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 640 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 163 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
tamarix_chinensis_TC09G2190T1 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
tamarix_chinensis_TC09G2333T1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
tamarix_chinensis_TC10G0084T1 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
tamarix_chinensis_TC10G0246T1 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
tamarix_chinensis_TC10G0935T1 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
tamarix_chinensis_TC10G1664T1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
tamarix_chinensis_TC10G1706T1 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
tamarix_chinensis_TC11G0325T1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
tamarix_chinensis_TC11G0520T1 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
tamarix_chinensis_TC11G0735T1 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
tamarix_chinensis_TC12G0714T1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
tamarix_chinensis_TC12G0715T1 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
tamarix_chinensis_TC12G1226T1 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
tamarix_chinensis_TC12G1780T1 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH