PlantSME Plant secondary metabolism enzyme database

Taraxacum kok-saghyz (taraxacum_kok_saghyz)

Imported from atlas release summary for Taraxacum kok-saghyz.

2266
Candidate Protein Records
1946
Pathway-Level Records
4924
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.65% Alkaloid pathway 19.58% Phenylpropanoid pathway 18.71% Flavonoid pathway 13.62% Rosmarinic acid pathway 10.43% Steroid pathway 6.01%
Family Distribution
C4H 7.29% C3'H/CYP98A 6.28% BAHD 6.03% 4CL 4.2% UGT 4.2% CYP76 3.92% IFS 3.88% 7DLGT 3.78%
Other Families 60.42%
More Families (96)
T3O 185 3.76% UFGT 185 3.76% POD 166 3.37% DWF4/CYP90B1 137 2.78% F3H 122 2.48% F3'H/CYP75B 98 1.99% CYP71 96 1.95% BR6OX2/CYP85A2 88 1.79% STR 84 1.71% NMT 83 1.69% SMT1/SMT2/SMT3 73 1.48% H6H 71 1.44% CODM/T6ODM 70 1.42% CAD 61 1.24% CAS 53 1.08% T16H 52 1.06% F3'5'H/CYP75A 51 1.04% BBE 48 0.97% TPS 48 0.97% LAC 47 0.95% CSE 46 0.93% TRI/TRII 45 0.91% PYKS 43 0.87% GES 43 0.87% TAT 40 0.81% HCT 39 0.79% GS 38 0.77% CYP90D1 38 0.77% IFR 37 0.75% G8O/G8H 36 0.73% SGD 36 0.73% IO 34 0.69% RAS 34 0.69% 7DLH 29 0.59% F5H/CYP84A 29 0.59% FNS 28 0.57% SLS 27 0.55% COMT 27 0.55% CYP51G1 27 0.55% CPD/CYP90A1 25 0.51% BR6OX1/CYP85A1 25 0.51% PAL 24 0.49% ANR 24 0.49% NCS 21 0.43% ANS/LDOX 20 0.41% PMT 19 0.39% FPPS 17 0.35% 16OMT 15 0.3% CCR 14 0.28% ROT3/CYP90C1 14 0.28% 8HGO 13 0.26% GGPPS 12 0.24% CNMT 11 0.22% CCoAOMT 11 0.22% HPPR 11 0.22% HMGR 11 0.22% LAMT 10 0.2% COR 10 0.2% DFR 10 0.2% AACT 10 0.2% ISY 9 0.18% CHS 9 0.18% CYP80B1 8 0.16% CYP719 7 0.14% CHI 7 0.14% CPR 7 0.14% SQS/FDFT1 7 0.14% MPO 6 0.12% TYDC_DDC 6 0.12% SQE 6 0.12% MVK 6 0.12% GPPS 6 0.12% MCT/IspD 6 0.12% DET2 5 0.1% DWF1 5 0.1% PMK 5 0.1% ADC 4 0.08% FLS 4 0.08% DWF7 4 0.08% SMO1/SMO2 4 0.08% DXS 4 0.08% HDS/IspG 4 0.08% HDR/IspH 4 0.08% XMT_MXMT_DXMT 3 0.06% MVD 3 0.06% CYP80F1 2 0.04% CMK/IspE 2 0.04% IDI 2 0.04% DXR 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% HMGS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 616 20 BAHD (223) View species results
Alkaloid pathway 381 24 7DLGT (95) View species results
Phenylpropanoid pathway 364 11 POD (152) View species results
Flavonoid pathway 265 12 UFGT (169) View species results
Rosmarinic acid pathway 203 7 C4H (92) View species results
Steroid pathway 117 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2060 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 370 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
TkokGWHAAAA000287000441490.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
TkokGWHAAAA000287330441890.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
TkokGWHAAAA000288140443280.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
TkokGWHAAAA000301170454480.1 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
TkokGWHAAAA000304720457740.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
TkokGWHAAAA000305390458240.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
TkokGWHAAAA000314930465920.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY