PlantSME Plant secondary metabolism enzyme database

Taraxacum kok-saghyz (taraxacum_kok_saghyz)

Imported from atlas release summary for Taraxacum kok-saghyz.

1946
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.65% Alkaloid pathway 19.58% Phenylpropanoid pathway 18.71% Flavonoid pathway 13.62% Rosmarinic acid pathway 10.43% Steroid pathway 6.01%
Family Distribution
C4H 7.29% C3'H/CYP98A 6.28% BAHD 6.03% 4CL 4.2% UGT 4.2% CYP76 3.92% IFS 3.88% 7DLGT 3.78%
Other Families 60.42%
More Families (96)
T3O 185 3.76% UFGT 185 3.76% POD 166 3.37% DWF4/CYP90B1 137 2.78% F3H 122 2.48% F3'H/CYP75B 98 1.99% CYP71 96 1.95% BR6OX2/CYP85A2 88 1.79% STR 84 1.71% NMT 83 1.69% SMT1/SMT2/SMT3 73 1.48% H6H 71 1.44% CODM/T6ODM 70 1.42% CAD 61 1.24% CAS 53 1.08% T16H 52 1.06% F3'5'H/CYP75A 51 1.04% BBE 48 0.97% TPS 48 0.97% LAC 47 0.95% CSE 46 0.93% TRI/TRII 45 0.91% PYKS 43 0.87% GES 43 0.87% TAT 40 0.81% HCT 39 0.79% GS 38 0.77% CYP90D1 38 0.77% IFR 37 0.75% G8O/G8H 36 0.73% SGD 36 0.73% IO 34 0.69% RAS 34 0.69% 7DLH 29 0.59% F5H/CYP84A 29 0.59% FNS 28 0.57% SLS 27 0.55% COMT 27 0.55% CYP51G1 27 0.55% CPD/CYP90A1 25 0.51% BR6OX1/CYP85A1 25 0.51% PAL 24 0.49% ANR 24 0.49% NCS 21 0.43% ANS/LDOX 20 0.41% PMT 19 0.39% FPPS 17 0.35% 16OMT 15 0.3% CCR 14 0.28% ROT3/CYP90C1 14 0.28% 8HGO 13 0.26% GGPPS 12 0.24% CNMT 11 0.22% CCoAOMT 11 0.22% HPPR 11 0.22% HMGR 11 0.22% LAMT 10 0.2% COR 10 0.2% DFR 10 0.2% AACT 10 0.2% ISY 9 0.18% CHS 9 0.18% CYP80B1 8 0.16% CYP719 7 0.14% CHI 7 0.14% CPR 7 0.14% SQS/FDFT1 7 0.14% MPO 6 0.12% TYDC_DDC 6 0.12% SQE 6 0.12% MVK 6 0.12% GPPS 6 0.12% MCT/IspD 6 0.12% DET2 5 0.1% DWF1 5 0.1% PMK 5 0.1% ADC 4 0.08% FLS 4 0.08% DWF7 4 0.08% SMO1/SMO2 4 0.08% DXS 4 0.08% HDS/IspG 4 0.08% HDR/IspH 4 0.08% XMT_MXMT_DXMT 3 0.06% MVD 3 0.06% CYP80F1 2 0.04% CMK/IspE 2 0.04% IDI 2 0.04% DXR 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% HMGS 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 616 20 BAHD (223) View species results
Alkaloid pathway 381 24 7DLGT (95) View species results
Phenylpropanoid pathway 364 11 POD (152) View species results
Flavonoid pathway 265 12 UFGT (169) View species results
Rosmarinic acid pathway 203 7 C4H (92) View species results
Steroid pathway 117 13 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2060 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 370 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
TkokGWHAAAA000000400001420.1 Alkaloid LAMT low borderline
TkokGWHAAAA000046740095920.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000094050194310.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000094420195320.1 Alkaloid LAMT medium pass
TkokGWHAAAA000109490217260.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000136240254960.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000140550261760.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000185020325990.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000188540329410.1 Alkaloid LAMT medium borderline
TkokGWHAAAA000266750418170.1 Alkaloid LAMT medium borderline