PlantSME Plant secondary metabolism enzyme database

Thamnobryum sandei (thamnobryum_sandei)

Imported from atlas release summary for Thamnobryum sandei.

1313
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.43% Terpenoid pathway 20.11% Alkaloid pathway 19.12% Flavonoid pathway 15.84% Rosmarinic acid pathway 12.64% Steroid pathway 5.86%
Family Distribution
C4H 6.27% C3'H/CYP98A 5.58% POD 5.55% CYP76 5.09% PAL 4.93% 4CL 4.84% BAHD 4.72% NMT 3.51%
Other Families 59.51%
More Families (96)
IFS 93 2.89% PYKS 85 2.64% BR6OX2/CYP85A2 75 2.33% DWF4/CYP90B1 72 2.23% T3O 70 2.17% STR 69 2.14% F3'H/CYP75B 69 2.14% IFR 65 2.02% F3H 64 1.99% CHS 64 1.99% GS 61 1.89% UGT 56 1.74% IO 53 1.64% 7DLGT 46 1.43% UFGT 45 1.4% F3'5'H/CYP75A 38 1.18% CAD 38 1.18% SMT1/SMT2/SMT3 38 1.18% TRI/TRII 37 1.15% G8O/G8H 36 1.12% CODM/T6ODM 35 1.09% H6H 35 1.09% CAS 35 1.09% CYP71 29 0.9% COMT 25 0.78% CPD/CYP90A1 24 0.74% SLS 22 0.68% T16H 22 0.68% FNS 21 0.65% CSE 20 0.62% 8HGO 19 0.59% RAS 19 0.59% LAC 17 0.53% NCS 16 0.5% CYP80B1 16 0.5% CCR 16 0.5% HCT 16 0.5% F5H/CYP84A 16 0.5% ANR 15 0.47% CYP90D1 15 0.47% SQS/FDFT1 13 0.4% AACT 13 0.4% SGD 12 0.37% CNMT 12 0.37% COR 12 0.37% LAMT 11 0.34% TDC 11 0.34% CPR 11 0.34% PMT 10 0.31% TYDC_DDC 10 0.31% HDS/IspG 10 0.31% BBE 9 0.28% CYP719 9 0.28% DWF5 9 0.28% CYP80F1 8 0.25% MPO 8 0.25% GES 7 0.22% TAT 7 0.22% BR6OX1/CYP85A1 7 0.22% SMO1/SMO2 7 0.22% GGPPS 7 0.22% TPS 7 0.22% CHI 6 0.19% FLS 6 0.19% 7DLH 5 0.16% 16OMT 5 0.16% DFR 5 0.16% ROT3/CYP90C1 5 0.16% DET2 5 0.16% 6OMT_4OMT_SOMT 4 0.12% ADC 4 0.12% CCoAOMT 4 0.12% DWF1 4 0.12% FPPS 4 0.12% HDR/IspH 4 0.12% MVK 4 0.12% MVD 4 0.12% HYD1 3 0.09% IDI 3 0.09% ISY 2 0.06% HPPR 2 0.06% CPI1 2 0.06% SQE 2 0.06% DXR 2 0.06% PMK 2 0.06% CMK/IspE 2 0.06% HMGR 2 0.06% DXS 2 0.06% XMT_MXMT_DXMT 1 0.03% ANS/LDOX 1 0.03% CYP51G1 1 0.03% DWF7 1 0.03% FK 1 0.03% MCT/IspD 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 347 12 POD (160) View species results
Terpenoid pathway 264 19 BAHD (92) View species results
Alkaloid pathway 251 23 PYKS (64) View species results
Flavonoid pathway 208 11 CHS (63) View species results
Rosmarinic acid pathway 166 7 C4H (59) View species results
Steroid pathway 77 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1231 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 187 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
THsancontig_570476200 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
THsancontig_570476270 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
THsancontig_570476850 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
THsancontig_580480010 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
THsancontig_590487230 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
THsancontig_600494330 Alkaloid NMT low borderline NMT__00021__sp_O64827_SUVR5_ARATH
THsancontig_610496220 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
THsancontig_610500240 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
THsancontig_610500460 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
THsancontig_760507390 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
THsancontig_860518300 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
THsancontig_860519160 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
THsancontig_960523960 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ