Thamnobryum sandei (thamnobryum_sandei)
Imported from atlas release summary for Thamnobryum sandei.
1313
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1313
Candidate Genes
C4H
6.27%
C3'H/CYP98A
5.58%
POD
5.55%
CYP76
5.09%
PAL
4.93%
4CL
4.84%
BAHD
4.72%
NMT
3.51%
Other Families
59.51%
More Families (96)
IFS
93
2.89%
PYKS
85
2.64%
BR6OX2/CYP85A2
75
2.33%
DWF4/CYP90B1
72
2.23%
T3O
70
2.17%
STR
69
2.14%
F3'H/CYP75B
69
2.14%
IFR
65
2.02%
F3H
64
1.99%
CHS
64
1.99%
GS
61
1.89%
UGT
56
1.74%
IO
53
1.64%
7DLGT
46
1.43%
UFGT
45
1.4%
F3'5'H/CYP75A
38
1.18%
CAD
38
1.18%
SMT1/SMT2/SMT3
38
1.18%
TRI/TRII
37
1.15%
G8O/G8H
36
1.12%
CODM/T6ODM
35
1.09%
H6H
35
1.09%
CAS
35
1.09%
CYP71
29
0.9%
COMT
25
0.78%
CPD/CYP90A1
24
0.74%
SLS
22
0.68%
T16H
22
0.68%
FNS
21
0.65%
CSE
20
0.62%
8HGO
19
0.59%
RAS
19
0.59%
LAC
17
0.53%
NCS
16
0.5%
CYP80B1
16
0.5%
CCR
16
0.5%
HCT
16
0.5%
F5H/CYP84A
16
0.5%
ANR
15
0.47%
CYP90D1
15
0.47%
SQS/FDFT1
13
0.4%
AACT
13
0.4%
SGD
12
0.37%
CNMT
12
0.37%
COR
12
0.37%
LAMT
11
0.34%
TDC
11
0.34%
CPR
11
0.34%
PMT
10
0.31%
TYDC_DDC
10
0.31%
HDS/IspG
10
0.31%
BBE
9
0.28%
CYP719
9
0.28%
DWF5
9
0.28%
CYP80F1
8
0.25%
MPO
8
0.25%
GES
7
0.22%
TAT
7
0.22%
BR6OX1/CYP85A1
7
0.22%
SMO1/SMO2
7
0.22%
GGPPS
7
0.22%
TPS
7
0.22%
CHI
6
0.19%
FLS
6
0.19%
7DLH
5
0.16%
16OMT
5
0.16%
DFR
5
0.16%
ROT3/CYP90C1
5
0.16%
DET2
5
0.16%
6OMT_4OMT_SOMT
4
0.12%
ADC
4
0.12%
CCoAOMT
4
0.12%
DWF1
4
0.12%
FPPS
4
0.12%
HDR/IspH
4
0.12%
MVK
4
0.12%
MVD
4
0.12%
HYD1
3
0.09%
IDI
3
0.09%
ISY
2
0.06%
HPPR
2
0.06%
CPI1
2
0.06%
SQE
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
CMK/IspE
2
0.06%
HMGR
2
0.06%
DXS
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ANS/LDOX
1
0.03%
CYP51G1
1
0.03%
DWF7
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 347 | 12 | POD (160) | View species results |
| Terpenoid pathway | 264 | 19 | BAHD (92) | View species results |
| Alkaloid pathway | 251 | 23 | PYKS (64) | View species results |
| Flavonoid pathway | 208 | 11 | CHS (63) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (59) | View species results |
| Steroid pathway | 77 | 12 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1231 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 187 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| THsancontig_570475860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_580480650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_590484710 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| THsancontig_590487030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_600489890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_600489970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_600489980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_600493670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_620501540 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_680504760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_770508900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_770508950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_80510350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_850515470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_850516150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_880519970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_940522770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| THsancontig_940522840 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| THsancontig_990526770 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |