Thamnobryum sandei (thamnobryum_sandei)
Imported from atlas release summary for Thamnobryum sandei.
1677
Candidate Protein Records
1313
Pathway-Level Records
3223
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3223
Family-Level Calls
C4H
6.27%
C3'H/CYP98A
5.58%
POD
5.55%
CYP76
5.09%
PAL
4.93%
4CL
4.84%
BAHD
4.72%
NMT
3.51%
Other Families
59.51%
More Families (96)
IFS
93
2.89%
PYKS
85
2.64%
BR6OX2/CYP85A2
75
2.33%
DWF4/CYP90B1
72
2.23%
T3O
70
2.17%
STR
69
2.14%
F3'H/CYP75B
69
2.14%
IFR
65
2.02%
F3H
64
1.99%
CHS
64
1.99%
GS
61
1.89%
UGT
56
1.74%
IO
53
1.64%
7DLGT
46
1.43%
UFGT
45
1.4%
F3'5'H/CYP75A
38
1.18%
CAD
38
1.18%
SMT1/SMT2/SMT3
38
1.18%
TRI/TRII
37
1.15%
G8O/G8H
36
1.12%
CODM/T6ODM
35
1.09%
H6H
35
1.09%
CAS
35
1.09%
CYP71
29
0.9%
COMT
25
0.78%
CPD/CYP90A1
24
0.74%
SLS
22
0.68%
T16H
22
0.68%
FNS
21
0.65%
CSE
20
0.62%
8HGO
19
0.59%
RAS
19
0.59%
LAC
17
0.53%
NCS
16
0.5%
CYP80B1
16
0.5%
CCR
16
0.5%
HCT
16
0.5%
F5H/CYP84A
16
0.5%
ANR
15
0.47%
CYP90D1
15
0.47%
SQS/FDFT1
13
0.4%
AACT
13
0.4%
SGD
12
0.37%
CNMT
12
0.37%
COR
12
0.37%
LAMT
11
0.34%
TDC
11
0.34%
CPR
11
0.34%
PMT
10
0.31%
TYDC_DDC
10
0.31%
HDS/IspG
10
0.31%
BBE
9
0.28%
CYP719
9
0.28%
DWF5
9
0.28%
CYP80F1
8
0.25%
MPO
8
0.25%
GES
7
0.22%
TAT
7
0.22%
BR6OX1/CYP85A1
7
0.22%
SMO1/SMO2
7
0.22%
GGPPS
7
0.22%
TPS
7
0.22%
CHI
6
0.19%
FLS
6
0.19%
7DLH
5
0.16%
16OMT
5
0.16%
DFR
5
0.16%
ROT3/CYP90C1
5
0.16%
DET2
5
0.16%
6OMT_4OMT_SOMT
4
0.12%
ADC
4
0.12%
CCoAOMT
4
0.12%
DWF1
4
0.12%
FPPS
4
0.12%
HDR/IspH
4
0.12%
MVK
4
0.12%
MVD
4
0.12%
HYD1
3
0.09%
IDI
3
0.09%
ISY
2
0.06%
HPPR
2
0.06%
CPI1
2
0.06%
SQE
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
CMK/IspE
2
0.06%
HMGR
2
0.06%
DXS
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ANS/LDOX
1
0.03%
CYP51G1
1
0.03%
DWF7
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 347 | 12 | POD (160) | View species results |
| Terpenoid pathway | 264 | 19 | BAHD (92) | View species results |
| Alkaloid pathway | 251 | 23 | PYKS (64) | View species results |
| Flavonoid pathway | 208 | 11 | CHS (63) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (59) | View species results |
| Steroid pathway | 77 | 12 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1231 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 187 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| THsancontig_3830406140 | Alkaloid | T3O | medium | borderline |
| THsancontig_3990420520 | Alkaloid | T3O | medium | borderline |
| THsancontig_3990420530 | Alkaloid | T3O | medium | borderline |
| THsancontig_400424480 | Alkaloid | T3O | medium | borderline |
| THsancontig_4060437430 | Alkaloid | T3O | medium | borderline |
| THsancontig_440450630 | Alkaloid | T3O | medium | borderline |
| THsancontig_440451920 | Alkaloid | T3O | medium | borderline |
| THsancontig_540473240 | Alkaloid | T3O | medium | borderline |
| THsancontig_610495770 | Alkaloid | T3O | medium | pass |
| THsancontig_610497850 | Alkaloid | T3O | medium | pass |
| THsancontig_610500290 | Alkaloid | T3O | medium | pass |
| THsancontig_760508310 | Alkaloid | T3O | medium | borderline |
| THsancontig_860519810 | Alkaloid | T3O | medium | borderline |
| THsancontig_90520690 | Alkaloid | T3O | medium | borderline |
| THsancontig_90520700 | Alkaloid | T3O | medium | borderline |
| THsancontig_90520710 | Alkaloid | T3O | medium | borderline |
| THsancontig_1230045380 | Alkaloid | TDC | low | borderline |
| THsancontig_2230178510 | Alkaloid | TDC | low | borderline |
| THsancontig_2540203670 | Alkaloid | TDC | low | borderline |
| THsancontig_3230315320 | Alkaloid | TDC | low | borderline |
| THsancontig_360377580 | Alkaloid | TDC | low | borderline |
| THsancontig_3690384680 | Alkaloid | TDC | medium | borderline |
| THsancontig_3730389520 | Alkaloid | TDC | medium | pass |
| THsancontig_3790401450 | Alkaloid | TDC | low | borderline |
| THsancontig_820512980 | Alkaloid | TDC | low | borderline |
| THsancontig_850515270 | Alkaloid | TDC | low | borderline |
| THsancontig_910521720 | Alkaloid | TDC | low | borderline |
| THsancontig_1350058690 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1350058700 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1410067490 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1690098240 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1690098300 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1830117940 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_1960130000 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_1960130030 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_2100155580 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_2450190430 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_2450190470 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_2590207120 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_2590210140 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_2630214200 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_2640216140 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_2680221530 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_290263940 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_3130296010 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_3130296020 | Alkaloid | TRI/TRII | low | borderline |
| THsancontig_3260320290 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_3370337630 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_3820405440 | Alkaloid | TRI/TRII | medium | pass |
| THsancontig_3820405480 | Alkaloid | TRI/TRII | medium | pass |