Thamnobryum sandei (thamnobryum_sandei)
Imported from atlas release summary for Thamnobryum sandei.
1313
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1313
Candidate Genes
C4H
6.27%
C3'H/CYP98A
5.58%
POD
5.55%
CYP76
5.09%
PAL
4.93%
4CL
4.84%
BAHD
4.72%
NMT
3.51%
Other Families
59.51%
More Families (96)
IFS
93
2.89%
PYKS
85
2.64%
BR6OX2/CYP85A2
75
2.33%
DWF4/CYP90B1
72
2.23%
T3O
70
2.17%
STR
69
2.14%
F3'H/CYP75B
69
2.14%
IFR
65
2.02%
F3H
64
1.99%
CHS
64
1.99%
GS
61
1.89%
UGT
56
1.74%
IO
53
1.64%
7DLGT
46
1.43%
UFGT
45
1.4%
F3'5'H/CYP75A
38
1.18%
CAD
38
1.18%
SMT1/SMT2/SMT3
38
1.18%
TRI/TRII
37
1.15%
G8O/G8H
36
1.12%
CODM/T6ODM
35
1.09%
H6H
35
1.09%
CAS
35
1.09%
CYP71
29
0.9%
COMT
25
0.78%
CPD/CYP90A1
24
0.74%
SLS
22
0.68%
T16H
22
0.68%
FNS
21
0.65%
CSE
20
0.62%
8HGO
19
0.59%
RAS
19
0.59%
LAC
17
0.53%
NCS
16
0.5%
CYP80B1
16
0.5%
CCR
16
0.5%
HCT
16
0.5%
F5H/CYP84A
16
0.5%
ANR
15
0.47%
CYP90D1
15
0.47%
SQS/FDFT1
13
0.4%
AACT
13
0.4%
SGD
12
0.37%
CNMT
12
0.37%
COR
12
0.37%
LAMT
11
0.34%
TDC
11
0.34%
CPR
11
0.34%
PMT
10
0.31%
TYDC_DDC
10
0.31%
HDS/IspG
10
0.31%
BBE
9
0.28%
CYP719
9
0.28%
DWF5
9
0.28%
CYP80F1
8
0.25%
MPO
8
0.25%
GES
7
0.22%
TAT
7
0.22%
BR6OX1/CYP85A1
7
0.22%
SMO1/SMO2
7
0.22%
GGPPS
7
0.22%
TPS
7
0.22%
CHI
6
0.19%
FLS
6
0.19%
7DLH
5
0.16%
16OMT
5
0.16%
DFR
5
0.16%
ROT3/CYP90C1
5
0.16%
DET2
5
0.16%
6OMT_4OMT_SOMT
4
0.12%
ADC
4
0.12%
CCoAOMT
4
0.12%
DWF1
4
0.12%
FPPS
4
0.12%
HDR/IspH
4
0.12%
MVK
4
0.12%
MVD
4
0.12%
HYD1
3
0.09%
IDI
3
0.09%
ISY
2
0.06%
HPPR
2
0.06%
CPI1
2
0.06%
SQE
2
0.06%
DXR
2
0.06%
PMK
2
0.06%
CMK/IspE
2
0.06%
HMGR
2
0.06%
DXS
2
0.06%
XMT_MXMT_DXMT
1
0.03%
ANS/LDOX
1
0.03%
CYP51G1
1
0.03%
DWF7
1
0.03%
FK
1
0.03%
MCT/IspD
1
0.03%
HMGS
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 347 | 12 | POD (160) | View species results |
| Terpenoid pathway | 264 | 19 | BAHD (92) | View species results |
| Alkaloid pathway | 251 | 23 | PYKS (64) | View species results |
| Flavonoid pathway | 208 | 11 | CHS (63) | View species results |
| Rosmarinic acid pathway | 166 | 7 | C4H (59) | View species results |
| Steroid pathway | 77 | 12 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1231 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 187 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| THsancontig_600491070 | Terpenoid | BAHD | low | borderline |
| THsancontig_600492000 | Terpenoid | BAHD | medium | pass |
| THsancontig_600492670 | Terpenoid | BAHD | low | borderline |
| THsancontig_600494260 | Terpenoid | BAHD | medium | pass |
| THsancontig_610495450 | Terpenoid | BAHD | medium | pass |
| THsancontig_610496690 | Terpenoid | BAHD | medium | pass |
| THsancontig_610497280 | Terpenoid | BAHD | medium | pass |
| THsancontig_610497440 | Terpenoid | BAHD | medium | pass |
| THsancontig_610499870 | Terpenoid | BAHD | low | borderline |
| THsancontig_720505520 | Terpenoid | BAHD | medium | pass |
| THsancontig_760507150 | Terpenoid | BAHD | medium | pass |
| THsancontig_830513150 | Terpenoid | BAHD | low | borderline |
| THsancontig_850516930 | Terpenoid | BAHD | medium | pass |
| THsancontig_860519030 | Terpenoid | BAHD | medium | pass |
| THsancontig_940522990 | Terpenoid | BAHD | medium | pass |
| THsancontig_2630214050 | Terpenoid | CMK/IspE | high | pass |
| THsancontig_290264130 | Terpenoid | CMK/IspE | high | pass |
| THsancontig_1300053080 | Terpenoid | CYP71 | low | borderline |
| THsancontig_1300053880 | Terpenoid | CYP71 | medium | pass |
| THsancontig_1640086380 | Terpenoid | CYP71 | medium | pass |
| THsancontig_1670092120 | Terpenoid | CYP71 | low | borderline |
| THsancontig_1700101510 | Terpenoid | CYP71 | medium | pass |
| THsancontig_1960130310 | Terpenoid | CYP71 | medium | pass |
| THsancontig_1970131230 | Terpenoid | CYP71 | medium | pass |
| THsancontig_1970132550 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2090152750 | Terpenoid | CYP71 | medium | pass |
| THsancontig_2150171950 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2150172000 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2210176920 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2290180740 | Terpenoid | CYP71 | medium | pass |
| THsancontig_2560205110 | Terpenoid | CYP71 | low | borderline |
| THsancontig_260211260 | Terpenoid | CYP71 | medium | pass |
| THsancontig_2650217700 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2880260680 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2990272680 | Terpenoid | CYP71 | low | borderline |
| THsancontig_2990273360 | Terpenoid | CYP71 | medium | pass |
| THsancontig_3220310300 | Terpenoid | CYP71 | medium | pass |
| THsancontig_3220310980 | Terpenoid | CYP71 | low | borderline |
| THsancontig_3260317280 | Terpenoid | CYP71 | low | borderline |
| THsancontig_3280325460 | Terpenoid | CYP71 | low | borderline |
| THsancontig_3420347470 | Terpenoid | CYP71 | low | borderline |
| THsancontig_3460364450 | Terpenoid | CYP71 | medium | pass |
| THsancontig_3500367700 | Terpenoid | CYP71 | low | borderline |
| THsancontig_3820405820 | Terpenoid | CYP71 | medium | pass |
| THsancontig_3970418930 | Terpenoid | CYP71 | medium | pass |
| THsancontig_400424790 | Terpenoid | CYP71 | low | borderline |
| THsancontig_1080012240 | Terpenoid | CYP76 | medium | borderline |
| THsancontig_1130017990 | Terpenoid | CYP76 | medium | pass |
| THsancontig_1140019760 | Terpenoid | CYP76 | medium | borderline |
| THsancontig_1140019790 | Terpenoid | CYP76 | medium | borderline |