PlantSME Plant secondary metabolism enzyme database

Trapa incisa (trapa_incisa)

Imported from atlas release summary for Trapa incisa.

1174
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.3% Phenylpropanoid pathway 22.66% Alkaloid pathway 19.34% Flavonoid pathway 13.03% Rosmarinic acid pathway 8.52% Steroid pathway 7.16%
Family Distribution
BAHD 6.84% C4H 5.19% C3'H/CYP98A 5.12% 4CL 4.42% POD 4.42% CYP76 3.58% NMT 3.44% UGT 3.4%
Other Families 63.57%
More Families (95)
UFGT 90 3.16% 7DLGT 89 3.12% IFS 89 3.12% F3H 74 2.6% STR 69 2.42% T3O 66 2.32% F3'H/CYP75B 55 1.93% SMT1/SMT2/SMT3 55 1.93% DWF4/CYP90B1 53 1.86% BR6OX2/CYP85A2 49 1.72% PAL 48 1.68% LAC 47 1.65% PYKS 46 1.61% CODM/T6ODM 45 1.58% IFR 44 1.54% CSE 39 1.37% H6H 37 1.3% CYP71 37 1.3% CAS 32 1.12% CAD 30 1.05% G8O/G8H 28 0.98% HCT 25 0.88% CYP90D1 24 0.84% IO 23 0.81% SGD 22 0.77% TPS 21 0.74% GS 20 0.7% T16H 20 0.7% TAT 20 0.7% SLS 19 0.67% NCS 19 0.67% PMT 19 0.67% ANR 18 0.63% COMT 18 0.63% RAS 18 0.63% CPD/CYP90A1 18 0.63% TRI/TRII 17 0.6% CCR 15 0.53% BBE 14 0.49% 7DLH 14 0.49% FNS 14 0.49% F5H/CYP84A 14 0.49% GES 13 0.46% 8HGO 12 0.42% COR 12 0.42% CNMT 11 0.39% ANS/LDOX 10 0.35% CPR 10 0.35% LAMT 9 0.32% F3'5'H/CYP75A 9 0.32% ROT3/CYP90C1 9 0.32% GGPPS 9 0.32% CHS 8 0.28% CCoAOMT 8 0.28% HPPR 8 0.28% SMO1/SMO2 8 0.28% BR6OX1/CYP85A1 8 0.28% FPPS 8 0.28% ADC 7 0.25% TYDC_DDC 7 0.25% CYP51G1 7 0.25% MVD 7 0.25% HMGR 7 0.25% MPO 6 0.21% 16OMT 6 0.21% SQS/FDFT1 6 0.21% DET2 6 0.21% PMK 6 0.21% TDC 5 0.18% SQE 5 0.18% MVK 5 0.18% AACT 5 0.18% IDI 5 0.18% ISY 4 0.14% XMT_MXMT_DXMT 4 0.14% CYP719 4 0.14% DFR 4 0.14% HMGS 4 0.14% DXS 4 0.14% CYP80B1 3 0.11% DWF1 3 0.11% HDS/IspG 3 0.11% MCT/IspD 3 0.11% FLS 2 0.07% CHI 2 0.07% FK 2 0.07% DWF7 2 0.07% HYD1 2 0.07% DXR 2 0.07% CMK/IspE 2 0.07% CYP80F1 1 0.04% CPI1 1 0.04% DWF5 1 0.04% MDS/IspF 1 0.04% HDR/IspH 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 344 19 BAHD (145) View species results
Phenylpropanoid pathway 266 12 POD (116) View species results
Alkaloid pathway 227 18 NMT (55) View species results
Flavonoid pathway 153 8 UFGT (86) View species results
Rosmarinic acid pathway 100 7 C4H (32) View species results
Steroid pathway 84 11 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 946 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 238 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
trapa_incisa_GWHPCBIN007805 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
trapa_incisa_GWHPCBIN011563 Alkaloid GES low borderline GES__00007__sp_Q6USK1_GERS_OCIBA
trapa_incisa_GWHPCBIN012248 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
trapa_incisa_GWHPCBIN019609 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
trapa_incisa_GWHPCBIN019610 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
trapa_incisa_GWHPCBIN019945 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
trapa_incisa_GWHPCBIN019946 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
trapa_incisa_GWHPCBIN019951 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
trapa_incisa_GWHPCBIN021813 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
trapa_incisa_GWHPCBIN024933 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
trapa_incisa_GWHPCBIN030267 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
trapa_incisa_GWHPCBIN030636 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
trapa_incisa_GWHPCBIN030639 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU