Trapa incisa (trapa_incisa)
Imported from atlas release summary for Trapa incisa.
1174
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1174
Candidate Genes
BAHD
6.84%
C4H
5.19%
C3'H/CYP98A
5.12%
4CL
4.42%
POD
4.42%
CYP76
3.58%
NMT
3.44%
UGT
3.4%
Other Families
63.57%
More Families (95)
UFGT
90
3.16%
7DLGT
89
3.12%
IFS
89
3.12%
F3H
74
2.6%
STR
69
2.42%
T3O
66
2.32%
F3'H/CYP75B
55
1.93%
SMT1/SMT2/SMT3
55
1.93%
DWF4/CYP90B1
53
1.86%
BR6OX2/CYP85A2
49
1.72%
PAL
48
1.68%
LAC
47
1.65%
PYKS
46
1.61%
CODM/T6ODM
45
1.58%
IFR
44
1.54%
CSE
39
1.37%
H6H
37
1.3%
CYP71
37
1.3%
CAS
32
1.12%
CAD
30
1.05%
G8O/G8H
28
0.98%
HCT
25
0.88%
CYP90D1
24
0.84%
IO
23
0.81%
SGD
22
0.77%
TPS
21
0.74%
GS
20
0.7%
T16H
20
0.7%
TAT
20
0.7%
SLS
19
0.67%
NCS
19
0.67%
PMT
19
0.67%
ANR
18
0.63%
COMT
18
0.63%
RAS
18
0.63%
CPD/CYP90A1
18
0.63%
TRI/TRII
17
0.6%
CCR
15
0.53%
BBE
14
0.49%
7DLH
14
0.49%
FNS
14
0.49%
F5H/CYP84A
14
0.49%
GES
13
0.46%
8HGO
12
0.42%
COR
12
0.42%
CNMT
11
0.39%
ANS/LDOX
10
0.35%
CPR
10
0.35%
LAMT
9
0.32%
F3'5'H/CYP75A
9
0.32%
ROT3/CYP90C1
9
0.32%
GGPPS
9
0.32%
CHS
8
0.28%
CCoAOMT
8
0.28%
HPPR
8
0.28%
SMO1/SMO2
8
0.28%
BR6OX1/CYP85A1
8
0.28%
FPPS
8
0.28%
ADC
7
0.25%
TYDC_DDC
7
0.25%
CYP51G1
7
0.25%
MVD
7
0.25%
HMGR
7
0.25%
MPO
6
0.21%
16OMT
6
0.21%
SQS/FDFT1
6
0.21%
DET2
6
0.21%
PMK
6
0.21%
TDC
5
0.18%
SQE
5
0.18%
MVK
5
0.18%
AACT
5
0.18%
IDI
5
0.18%
ISY
4
0.14%
XMT_MXMT_DXMT
4
0.14%
CYP719
4
0.14%
DFR
4
0.14%
HMGS
4
0.14%
DXS
4
0.14%
CYP80B1
3
0.11%
DWF1
3
0.11%
HDS/IspG
3
0.11%
MCT/IspD
3
0.11%
FLS
2
0.07%
CHI
2
0.07%
FK
2
0.07%
DWF7
2
0.07%
HYD1
2
0.07%
DXR
2
0.07%
CMK/IspE
2
0.07%
CYP80F1
1
0.04%
CPI1
1
0.04%
DWF5
1
0.04%
MDS/IspF
1
0.04%
HDR/IspH
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 344 | 19 | BAHD (145) | View species results |
| Phenylpropanoid pathway | 266 | 12 | POD (116) | View species results |
| Alkaloid pathway | 227 | 18 | NMT (55) | View species results |
| Flavonoid pathway | 153 | 8 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 100 | 7 | C4H (32) | View species results |
| Steroid pathway | 84 | 11 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 946 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 238 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| trapa_incisa_GWHPCBIN001514 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| trapa_incisa_GWHPCBIN002377 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| trapa_incisa_GWHPCBIN002593 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| trapa_incisa_GWHPCBIN008055 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| trapa_incisa_GWHPCBIN011474 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| trapa_incisa_GWHPCBIN012779 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| trapa_incisa_GWHPCBIN013406 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| trapa_incisa_GWHPCBIN016169 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| trapa_incisa_GWHPCBIN021164 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| trapa_incisa_GWHPCBIN021717 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| trapa_incisa_GWHPCBIN023569 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| trapa_incisa_GWHPCBIN025673 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| trapa_incisa_GWHPCBIN027940 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| trapa_incisa_GWHPCBIN028963 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| trapa_incisa_GWHPCBIN030126 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| trapa_incisa_GWHPCBIN031538 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| trapa_incisa_GWHPCBIN032068 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |