PlantSME Plant secondary metabolism enzyme database

Treubia (treubia)

Imported from atlas release summary for Treubia.

558
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.88% Terpenoid pathway 22.22% Alkaloid pathway 17.56% Steroid pathway 17.56% Rosmarinic acid pathway 8.06% Flavonoid pathway 7.71%
Family Distribution
C4H 8.69% C3'H/CYP98A 7.2% CYP76 6.07% BAHD 4.7% DWF5 4.46% POD 4.11% NMT 3.63% 4CL 3.57%
Other Families 57.56%
More Families (95)
IFS 56 3.33% T3O 48 2.86% F3'H/CYP75B 48 2.86% DWF4/CYP90B1 48 2.86% BR6OX2/CYP85A2 47 2.8% STR 41 2.44% F3H 28 1.67% IO 26 1.55% G8O/G8H 25 1.49% PYKS 22 1.31% IFR 21 1.25% TRI/TRII 20 1.19% F3'5'H/CYP75A 19 1.13% COMT 19 1.13% HCT 19 1.13% PAL 18 1.07% SMT1/SMT2/SMT3 18 1.07% CYP90D1 17 1.01% SLS 16 0.95% CHS 16 0.95% FNS 16 0.95% CODM/T6ODM 15 0.89% GS 15 0.89% CYP80B1 15 0.89% CSE 14 0.83% BR6OX1/CYP85A1 14 0.83% H6H 13 0.77% F5H/CYP84A 13 0.77% RAS 13 0.77% T16H 12 0.71% CYP71 12 0.71% CYP719 10 0.6% CAD 10 0.6% CAS 10 0.6% 16OMT 9 0.54% TAT 9 0.54% CPD/CYP90A1 9 0.54% CNMT 8 0.48% UFGT 8 0.48% UGT 8 0.48% TPS 8 0.48% 7DLGT 7 0.42% ANR 7 0.42% ROT3/CYP90C1 7 0.42% LAC 6 0.36% CYP51G1 6 0.36% FPPS 6 0.36% MVD 6 0.36% 7DLH 5 0.3% COR 5 0.3% PMT 5 0.3% CCR 5 0.3% GGPPS 5 0.3% MVK 5 0.3% AACT 5 0.3% CCoAOMT 4 0.24% CPR 4 0.24% DET2 4 0.24% ADC 3 0.18% SGD 3 0.18% TYDC_DDC 3 0.18% CHI 3 0.18% CPI1 3 0.18% 8HGO 2 0.12% LAMT 2 0.12% MPO 2 0.12% BBE 2 0.12% DFR 2 0.12% HPPR 2 0.12% SQS/FDFT1 2 0.12% FK 2 0.12% SMO1/SMO2 2 0.12% SQE 2 0.12% HYD1 2 0.12% DWF1 2 0.12% MDS/IspF 2 0.12% MCT/IspD 2 0.12% HDR/IspH 2 0.12% CYP80F1 1 0.06% NCS 1 0.06% TDC 1 0.06% ISY 1 0.06% GES 1 0.06% FLS 1 0.06% ANS/LDOX 1 0.06% DWF7 1 0.06% DXR 1 0.06% DXS 1 0.06% GPPS 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06% HMGS 1 0.06% HDS/IspG 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 150 10 POD (63) View species results
Terpenoid pathway 124 19 BAHD (55) View species results
Alkaloid pathway 98 16 NMT (20) View species results
Steroid pathway 98 13 DWF5 (67) View species results
Rosmarinic acid pathway 45 7 C4H (17) View species results
Flavonoid pathway 43 7 CHS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 823 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
Treubia10820003170 Phenylpropanoid CAD medium borderline
Treubia1300019530 Phenylpropanoid CAD medium pass
Treubia1440030080 Phenylpropanoid CAD low borderline
Treubia15510038020 Phenylpropanoid CAD medium borderline
Treubia2680117810 Phenylpropanoid CAD low borderline
Treubia4580630208500 Phenylpropanoid CAD medium pass
Treubia4590224910 Phenylpropanoid CAD low borderline
Treubia4950231640 Phenylpropanoid CAD low borderline
Treubia5720245210 Phenylpropanoid CAD low borderline
Treubia9060266400 Phenylpropanoid CAD medium borderline