PlantSME Plant secondary metabolism enzyme database

Treubia (treubia)

Imported from atlas release summary for Treubia.

558
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.88% Terpenoid pathway 22.22% Alkaloid pathway 17.56% Steroid pathway 17.56% Rosmarinic acid pathway 8.06% Flavonoid pathway 7.71%
Family Distribution
C4H 8.69% C3'H/CYP98A 7.2% CYP76 6.07% BAHD 4.7% DWF5 4.46% POD 4.11% NMT 3.63% 4CL 3.57%
Other Families 57.56%
More Families (95)
IFS 56 3.33% T3O 48 2.86% F3'H/CYP75B 48 2.86% DWF4/CYP90B1 48 2.86% BR6OX2/CYP85A2 47 2.8% STR 41 2.44% F3H 28 1.67% IO 26 1.55% G8O/G8H 25 1.49% PYKS 22 1.31% IFR 21 1.25% TRI/TRII 20 1.19% F3'5'H/CYP75A 19 1.13% COMT 19 1.13% HCT 19 1.13% PAL 18 1.07% SMT1/SMT2/SMT3 18 1.07% CYP90D1 17 1.01% SLS 16 0.95% CHS 16 0.95% FNS 16 0.95% CODM/T6ODM 15 0.89% GS 15 0.89% CYP80B1 15 0.89% CSE 14 0.83% BR6OX1/CYP85A1 14 0.83% H6H 13 0.77% F5H/CYP84A 13 0.77% RAS 13 0.77% T16H 12 0.71% CYP71 12 0.71% CYP719 10 0.6% CAD 10 0.6% CAS 10 0.6% 16OMT 9 0.54% TAT 9 0.54% CPD/CYP90A1 9 0.54% CNMT 8 0.48% UFGT 8 0.48% UGT 8 0.48% TPS 8 0.48% 7DLGT 7 0.42% ANR 7 0.42% ROT3/CYP90C1 7 0.42% LAC 6 0.36% CYP51G1 6 0.36% FPPS 6 0.36% MVD 6 0.36% 7DLH 5 0.3% COR 5 0.3% PMT 5 0.3% CCR 5 0.3% GGPPS 5 0.3% MVK 5 0.3% AACT 5 0.3% CCoAOMT 4 0.24% CPR 4 0.24% DET2 4 0.24% ADC 3 0.18% SGD 3 0.18% TYDC_DDC 3 0.18% CHI 3 0.18% CPI1 3 0.18% 8HGO 2 0.12% LAMT 2 0.12% MPO 2 0.12% BBE 2 0.12% DFR 2 0.12% HPPR 2 0.12% SQS/FDFT1 2 0.12% FK 2 0.12% SMO1/SMO2 2 0.12% SQE 2 0.12% HYD1 2 0.12% DWF1 2 0.12% MDS/IspF 2 0.12% MCT/IspD 2 0.12% HDR/IspH 2 0.12% CYP80F1 1 0.06% NCS 1 0.06% TDC 1 0.06% ISY 1 0.06% GES 1 0.06% FLS 1 0.06% ANS/LDOX 1 0.06% DWF7 1 0.06% DXR 1 0.06% DXS 1 0.06% GPPS 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06% HMGS 1 0.06% HDS/IspG 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 150 10 POD (63) View species results
Terpenoid pathway 124 19 BAHD (55) View species results
Alkaloid pathway 98 16 NMT (20) View species results
Steroid pathway 98 13 DWF5 (67) View species results
Rosmarinic acid pathway 45 7 C4H (17) View species results
Flavonoid pathway 43 7 CHS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 823 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
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Gene Pathway Family Confidence Status Best Target
Treubia1340021810 Terpenoid UGT medium pass UGT__00020__sp_A3BK75_UGT83_ORYSJ
Treubia2350093150 Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Treubia2350093160 Terpenoid UGT low borderline UGT__00103__sp_Q9M156_U72B1_ARATH
Treubia24180096970 Terpenoid UGT low borderline UGT__00001__sp_A0A067YB04_UGT1_PUEML
Treubia26330111370 Terpenoid UGT medium pass UGT__00061__sp_P0DO49_U71K3_FRAAN
Treubia3960152320 Terpenoid UGT medium pass UGT__00111__sp_Q9ZQ99_U73C1_ARATH
Treubia4573100189610 Terpenoid UGT medium pass UGT__00076__sp_Q8L7M0_TUN_ARATH
Treubia960270030 Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO