Treubia (treubia)
Imported from atlas release summary for Treubia.
558
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
558
Candidate Genes
C4H
8.69%
C3'H/CYP98A
7.2%
CYP76
6.07%
BAHD
4.7%
DWF5
4.46%
POD
4.11%
NMT
3.63%
4CL
3.57%
Other Families
57.56%
More Families (95)
IFS
56
3.33%
T3O
48
2.86%
F3'H/CYP75B
48
2.86%
DWF4/CYP90B1
48
2.86%
BR6OX2/CYP85A2
47
2.8%
STR
41
2.44%
F3H
28
1.67%
IO
26
1.55%
G8O/G8H
25
1.49%
PYKS
22
1.31%
IFR
21
1.25%
TRI/TRII
20
1.19%
F3'5'H/CYP75A
19
1.13%
COMT
19
1.13%
HCT
19
1.13%
PAL
18
1.07%
SMT1/SMT2/SMT3
18
1.07%
CYP90D1
17
1.01%
SLS
16
0.95%
CHS
16
0.95%
FNS
16
0.95%
CODM/T6ODM
15
0.89%
GS
15
0.89%
CYP80B1
15
0.89%
CSE
14
0.83%
BR6OX1/CYP85A1
14
0.83%
H6H
13
0.77%
F5H/CYP84A
13
0.77%
RAS
13
0.77%
T16H
12
0.71%
CYP71
12
0.71%
CYP719
10
0.6%
CAD
10
0.6%
CAS
10
0.6%
16OMT
9
0.54%
TAT
9
0.54%
CPD/CYP90A1
9
0.54%
CNMT
8
0.48%
UFGT
8
0.48%
UGT
8
0.48%
TPS
8
0.48%
7DLGT
7
0.42%
ANR
7
0.42%
ROT3/CYP90C1
7
0.42%
LAC
6
0.36%
CYP51G1
6
0.36%
FPPS
6
0.36%
MVD
6
0.36%
7DLH
5
0.3%
COR
5
0.3%
PMT
5
0.3%
CCR
5
0.3%
GGPPS
5
0.3%
MVK
5
0.3%
AACT
5
0.3%
CCoAOMT
4
0.24%
CPR
4
0.24%
DET2
4
0.24%
ADC
3
0.18%
SGD
3
0.18%
TYDC_DDC
3
0.18%
CHI
3
0.18%
CPI1
3
0.18%
8HGO
2
0.12%
LAMT
2
0.12%
MPO
2
0.12%
BBE
2
0.12%
DFR
2
0.12%
HPPR
2
0.12%
SQS/FDFT1
2
0.12%
FK
2
0.12%
SMO1/SMO2
2
0.12%
SQE
2
0.12%
HYD1
2
0.12%
DWF1
2
0.12%
MDS/IspF
2
0.12%
MCT/IspD
2
0.12%
HDR/IspH
2
0.12%
CYP80F1
1
0.06%
NCS
1
0.06%
TDC
1
0.06%
ISY
1
0.06%
GES
1
0.06%
FLS
1
0.06%
ANS/LDOX
1
0.06%
DWF7
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
GPPS
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 150 | 10 | POD (63) | View species results |
| Terpenoid pathway | 124 | 19 | BAHD (55) | View species results |
| Alkaloid pathway | 98 | 16 | NMT (20) | View species results |
| Steroid pathway | 98 | 13 | DWF5 (67) | View species results |
| Rosmarinic acid pathway | 45 | 7 | C4H (17) | View species results |
| Flavonoid pathway | 43 | 7 | CHS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 823 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Treubia11020005520 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Treubia1150008270 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Treubia11580008570 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Treubia11970011290 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Treubia1280017850 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Treubia13150020810 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Treubia1340021620 | Alkaloid | NMT | low | borderline | NMT__00019__sp_O22781_SUVH2_ARATH |
| Treubia15360036880 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Treubia16350045160 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Treubia16990049060 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Treubia17150050040 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Treubia17150050140 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Treubia17260050830 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Treubia1750053130 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Treubia17730055790 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Treubia17730055810 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Treubia1790058120 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Treubia1810059590 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Treubia18470062530 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Treubia18470062540 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Treubia1880064560 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Treubia1910066560 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Treubia20030071750 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Treubia20030071760 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Treubia20750075660 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Treubia21470079610 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Treubia2510102370 | Alkaloid | NMT | low | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Treubia2570106720 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Treubia2595370108310 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Treubia26630115510 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Treubia26980121100 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Treubia2920128410 | Alkaloid | NMT | low | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Treubia3033650132990 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Treubia3190134950 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Treubia3390139660 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Treubia3450140940 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Treubia3505250141640 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Treubia3600143540 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Treubia3868640149850 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Treubia4070155580 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Treubia4170157750 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Treubia4216870159000 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Treubia4245900160100 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Treubia4542590173240 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Treubia4568900182850 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Treubia4575250194110 | Alkaloid | NMT | low | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Treubia4581400212170 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Treubia4583520219570 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Treubia4990232340 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| Treubia4990232370 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |