PlantSME Plant secondary metabolism enzyme database

Treubia (treubia)

Imported from atlas release summary for Treubia.

558
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.88% Terpenoid pathway 22.22% Alkaloid pathway 17.56% Steroid pathway 17.56% Rosmarinic acid pathway 8.06% Flavonoid pathway 7.71%
Family Distribution
C4H 8.69% C3'H/CYP98A 7.2% CYP76 6.07% BAHD 4.7% DWF5 4.46% POD 4.11% NMT 3.63% 4CL 3.57%
Other Families 57.56%
More Families (95)
IFS 56 3.33% T3O 48 2.86% F3'H/CYP75B 48 2.86% DWF4/CYP90B1 48 2.86% BR6OX2/CYP85A2 47 2.8% STR 41 2.44% F3H 28 1.67% IO 26 1.55% G8O/G8H 25 1.49% PYKS 22 1.31% IFR 21 1.25% TRI/TRII 20 1.19% F3'5'H/CYP75A 19 1.13% COMT 19 1.13% HCT 19 1.13% PAL 18 1.07% SMT1/SMT2/SMT3 18 1.07% CYP90D1 17 1.01% SLS 16 0.95% CHS 16 0.95% FNS 16 0.95% CODM/T6ODM 15 0.89% GS 15 0.89% CYP80B1 15 0.89% CSE 14 0.83% BR6OX1/CYP85A1 14 0.83% H6H 13 0.77% F5H/CYP84A 13 0.77% RAS 13 0.77% T16H 12 0.71% CYP71 12 0.71% CYP719 10 0.6% CAD 10 0.6% CAS 10 0.6% 16OMT 9 0.54% TAT 9 0.54% CPD/CYP90A1 9 0.54% CNMT 8 0.48% UFGT 8 0.48% UGT 8 0.48% TPS 8 0.48% 7DLGT 7 0.42% ANR 7 0.42% ROT3/CYP90C1 7 0.42% LAC 6 0.36% CYP51G1 6 0.36% FPPS 6 0.36% MVD 6 0.36% 7DLH 5 0.3% COR 5 0.3% PMT 5 0.3% CCR 5 0.3% GGPPS 5 0.3% MVK 5 0.3% AACT 5 0.3% CCoAOMT 4 0.24% CPR 4 0.24% DET2 4 0.24% ADC 3 0.18% SGD 3 0.18% TYDC_DDC 3 0.18% CHI 3 0.18% CPI1 3 0.18% 8HGO 2 0.12% LAMT 2 0.12% MPO 2 0.12% BBE 2 0.12% DFR 2 0.12% HPPR 2 0.12% SQS/FDFT1 2 0.12% FK 2 0.12% SMO1/SMO2 2 0.12% SQE 2 0.12% HYD1 2 0.12% DWF1 2 0.12% MDS/IspF 2 0.12% MCT/IspD 2 0.12% HDR/IspH 2 0.12% CYP80F1 1 0.06% NCS 1 0.06% TDC 1 0.06% ISY 1 0.06% GES 1 0.06% FLS 1 0.06% ANS/LDOX 1 0.06% DWF7 1 0.06% DXR 1 0.06% DXS 1 0.06% GPPS 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% HMGR 1 0.06% PMK 1 0.06% HMGS 1 0.06% HDS/IspG 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 150 10 POD (63) View species results
Terpenoid pathway 124 19 BAHD (55) View species results
Alkaloid pathway 98 16 NMT (20) View species results
Steroid pathway 98 13 DWF5 (67) View species results
Rosmarinic acid pathway 45 7 C4H (17) View species results
Flavonoid pathway 43 7 CHS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 823 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 111 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Treubia4990232380 Alkaloid NMT medium borderline NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Treubia5110234520 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Treubia5520240540 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Treubia5600241950 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
Treubia5670243500 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Treubia6251590248260 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Treubia6251620248270 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Treubia6266500249550 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Treubia6266510249560 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Treubia710253720 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Treubia960269870 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH