Treubia (treubia)
Imported from atlas release summary for Treubia.
828
Candidate Protein Records
558
Pathway-Level Records
1680
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1680
Family-Level Calls
C4H
8.69%
C3'H/CYP98A
7.2%
CYP76
6.07%
BAHD
4.7%
DWF5
4.46%
POD
4.11%
NMT
3.63%
4CL
3.57%
Other Families
57.56%
More Families (95)
IFS
56
3.33%
T3O
48
2.86%
F3'H/CYP75B
48
2.86%
DWF4/CYP90B1
48
2.86%
BR6OX2/CYP85A2
47
2.8%
STR
41
2.44%
F3H
28
1.67%
IO
26
1.55%
G8O/G8H
25
1.49%
PYKS
22
1.31%
IFR
21
1.25%
TRI/TRII
20
1.19%
F3'5'H/CYP75A
19
1.13%
COMT
19
1.13%
HCT
19
1.13%
PAL
18
1.07%
SMT1/SMT2/SMT3
18
1.07%
CYP90D1
17
1.01%
SLS
16
0.95%
CHS
16
0.95%
FNS
16
0.95%
CODM/T6ODM
15
0.89%
GS
15
0.89%
CYP80B1
15
0.89%
CSE
14
0.83%
BR6OX1/CYP85A1
14
0.83%
H6H
13
0.77%
F5H/CYP84A
13
0.77%
RAS
13
0.77%
T16H
12
0.71%
CYP71
12
0.71%
CYP719
10
0.6%
CAD
10
0.6%
CAS
10
0.6%
16OMT
9
0.54%
TAT
9
0.54%
CPD/CYP90A1
9
0.54%
CNMT
8
0.48%
UFGT
8
0.48%
UGT
8
0.48%
TPS
8
0.48%
7DLGT
7
0.42%
ANR
7
0.42%
ROT3/CYP90C1
7
0.42%
LAC
6
0.36%
CYP51G1
6
0.36%
FPPS
6
0.36%
MVD
6
0.36%
7DLH
5
0.3%
COR
5
0.3%
PMT
5
0.3%
CCR
5
0.3%
GGPPS
5
0.3%
MVK
5
0.3%
AACT
5
0.3%
CCoAOMT
4
0.24%
CPR
4
0.24%
DET2
4
0.24%
ADC
3
0.18%
SGD
3
0.18%
TYDC_DDC
3
0.18%
CHI
3
0.18%
CPI1
3
0.18%
8HGO
2
0.12%
LAMT
2
0.12%
MPO
2
0.12%
BBE
2
0.12%
DFR
2
0.12%
HPPR
2
0.12%
SQS/FDFT1
2
0.12%
FK
2
0.12%
SMO1/SMO2
2
0.12%
SQE
2
0.12%
HYD1
2
0.12%
DWF1
2
0.12%
MDS/IspF
2
0.12%
MCT/IspD
2
0.12%
HDR/IspH
2
0.12%
CYP80F1
1
0.06%
NCS
1
0.06%
TDC
1
0.06%
ISY
1
0.06%
GES
1
0.06%
FLS
1
0.06%
ANS/LDOX
1
0.06%
DWF7
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
GPPS
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 150 | 10 | POD (63) | View species results |
| Terpenoid pathway | 124 | 19 | BAHD (55) | View species results |
| Alkaloid pathway | 98 | 16 | NMT (20) | View species results |
| Steroid pathway | 98 | 13 | DWF5 (67) | View species results |
| Rosmarinic acid pathway | 45 | 7 | C4H (17) | View species results |
| Flavonoid pathway | 43 | 7 | CHS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 823 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Treubia4578370203390 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4579100205460 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4580180207520 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4581400212070 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4583860219730 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4588990224640 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4617850225470 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4617860225480 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4710227130 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4870230370 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4970231940 | Rosmarinic Acid | C4H | low | borderline |
| Treubia4970231950 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5220236480 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5220236500 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5230236770 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5230236800 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5750246070 | Rosmarinic Acid | C4H | low | borderline |
| Treubia5750246140 | Rosmarinic Acid | C4H | medium | pass |
| Treubia7890260560 | Rosmarinic Acid | C4H | low | borderline |
| Treubia8460262750 | Rosmarinic Acid | C4H | low | borderline |
| Treubia900265690 | Rosmarinic Acid | C4H | low | borderline |
| Treubia9780271890 | Rosmarinic Acid | C4H | low | borderline |
| Treubia9900272680 | Rosmarinic Acid | C4H | low | borderline |
| Treubia9920272710 | Rosmarinic Acid | C4H | low | borderline |
| Treubia1510034620 | Rosmarinic Acid | CPR | low | borderline |
| Treubia1600042180 | Rosmarinic Acid | CPR | low | borderline |
| Treubia4500250169720 | Rosmarinic Acid | CPR | medium | pass |
| Treubia4572400188210 | Rosmarinic Acid | CPR | medium | pass |
| Treubia1670047170 | Rosmarinic Acid | HPPR | low | borderline |
| Treubia1910066540 | Rosmarinic Acid | HPPR | medium | pass |
| Treubia1090003510 | Rosmarinic Acid | PAL | high | pass |
| Treubia1930068680 | Rosmarinic Acid | PAL | low | borderline |
| Treubia23560093980 | Rosmarinic Acid | PAL | high | pass |
| Treubia24890100760 | Rosmarinic Acid | PAL | high | pass |
| Treubia4578780204430 | Rosmarinic Acid | PAL | high | pass |
| Treubia960270020 | Rosmarinic Acid | PAL | high | pass |
| Treubia1390025560 | Rosmarinic Acid | RAS | medium | pass |
| Treubia15140034840 | Rosmarinic Acid | RAS | medium | pass |
| Treubia17490052760 | Rosmarinic Acid | RAS | medium | pass |
| Treubia2940129900 | Rosmarinic Acid | RAS | medium | pass |
| Treubia2980130970 | Rosmarinic Acid | RAS | medium | pass |
| Treubia3130133540 | Rosmarinic Acid | RAS | low | borderline |
| Treubia3420140210 | Rosmarinic Acid | RAS | medium | pass |
| Treubia4562760177970 | Rosmarinic Acid | RAS | medium | pass |
| Treubia4572590188510 | Rosmarinic Acid | RAS | low | borderline |
| Treubia4575160193750 | Rosmarinic Acid | RAS | low | borderline |
| Treubia4578600203960 | Rosmarinic Acid | RAS | low | borderline |
| Treubia4890230800 | Rosmarinic Acid | RAS | low | borderline |
| Treubia4950231590 | Rosmarinic Acid | RAS | low | borderline |
| Treubia1430029150 | Rosmarinic Acid | TAT | low | borderline |