Treubia (treubia)
Imported from atlas release summary for Treubia.
558
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
558
Candidate Genes
C4H
8.69%
C3'H/CYP98A
7.2%
CYP76
6.07%
BAHD
4.7%
DWF5
4.46%
POD
4.11%
NMT
3.63%
4CL
3.57%
Other Families
57.56%
More Families (95)
IFS
56
3.33%
T3O
48
2.86%
F3'H/CYP75B
48
2.86%
DWF4/CYP90B1
48
2.86%
BR6OX2/CYP85A2
47
2.8%
STR
41
2.44%
F3H
28
1.67%
IO
26
1.55%
G8O/G8H
25
1.49%
PYKS
22
1.31%
IFR
21
1.25%
TRI/TRII
20
1.19%
F3'5'H/CYP75A
19
1.13%
COMT
19
1.13%
HCT
19
1.13%
PAL
18
1.07%
SMT1/SMT2/SMT3
18
1.07%
CYP90D1
17
1.01%
SLS
16
0.95%
CHS
16
0.95%
FNS
16
0.95%
CODM/T6ODM
15
0.89%
GS
15
0.89%
CYP80B1
15
0.89%
CSE
14
0.83%
BR6OX1/CYP85A1
14
0.83%
H6H
13
0.77%
F5H/CYP84A
13
0.77%
RAS
13
0.77%
T16H
12
0.71%
CYP71
12
0.71%
CYP719
10
0.6%
CAD
10
0.6%
CAS
10
0.6%
16OMT
9
0.54%
TAT
9
0.54%
CPD/CYP90A1
9
0.54%
CNMT
8
0.48%
UFGT
8
0.48%
UGT
8
0.48%
TPS
8
0.48%
7DLGT
7
0.42%
ANR
7
0.42%
ROT3/CYP90C1
7
0.42%
LAC
6
0.36%
CYP51G1
6
0.36%
FPPS
6
0.36%
MVD
6
0.36%
7DLH
5
0.3%
COR
5
0.3%
PMT
5
0.3%
CCR
5
0.3%
GGPPS
5
0.3%
MVK
5
0.3%
AACT
5
0.3%
CCoAOMT
4
0.24%
CPR
4
0.24%
DET2
4
0.24%
ADC
3
0.18%
SGD
3
0.18%
TYDC_DDC
3
0.18%
CHI
3
0.18%
CPI1
3
0.18%
8HGO
2
0.12%
LAMT
2
0.12%
MPO
2
0.12%
BBE
2
0.12%
DFR
2
0.12%
HPPR
2
0.12%
SQS/FDFT1
2
0.12%
FK
2
0.12%
SMO1/SMO2
2
0.12%
SQE
2
0.12%
HYD1
2
0.12%
DWF1
2
0.12%
MDS/IspF
2
0.12%
MCT/IspD
2
0.12%
HDR/IspH
2
0.12%
CYP80F1
1
0.06%
NCS
1
0.06%
TDC
1
0.06%
ISY
1
0.06%
GES
1
0.06%
FLS
1
0.06%
ANS/LDOX
1
0.06%
DWF7
1
0.06%
DXR
1
0.06%
DXS
1
0.06%
GPPS
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
HMGR
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
HDS/IspG
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 150 | 10 | POD (63) | View species results |
| Terpenoid pathway | 124 | 19 | BAHD (55) | View species results |
| Alkaloid pathway | 98 | 16 | NMT (20) | View species results |
| Steroid pathway | 98 | 13 | DWF5 (67) | View species results |
| Rosmarinic acid pathway | 45 | 7 | C4H (17) | View species results |
| Flavonoid pathway | 43 | 7 | CHS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 823 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 111 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Treubia4549220174110 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Treubia4568010181920 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Treubia4572400188170 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Treubia4575930195680 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Treubia4576590197670 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Treubia4579590206080 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Treubia4579590206090 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Treubia4584090220410 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Treubia4584280220990 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Treubia4710227120 | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Treubia5750246060 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Treubia6990252440 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Treubia710253750 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Treubia720254670 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Treubia7350256460 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Treubia7890260580 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Treubia8180261730 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Treubia8900264640 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Treubia900266030 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Treubia9700271580 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |