PlantSME Plant secondary metabolism enzyme database

Typha angustifolia (typha_angustifolia)

Imported from atlas release summary for Typha angustifolia.

1135
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.78% Phenylpropanoid pathway 25.64% Alkaloid pathway 21.23% Flavonoid pathway 11.01% Rosmarinic acid pathway 9.25% Steroid pathway 6.08%
Family Distribution
BAHD 7.04% C3'H/CYP98A 6.07% POD 5.64% C4H 5.56% 4CL 3.97% T3O 3.34% CYP76 3.34% IFS 3.27%
Other Families 61.78%
More Families (93)
UGT 81 3.15% 7DLGT 73 2.84% UFGT 72 2.8% F3H 64 2.49% DWF4/CYP90B1 57 2.22% F3'H/CYP75B 56 2.18% NMT 54 2.1% STR 52 2.02% RAS 50 1.94% BR6OX2/CYP85A2 50 1.94% CYP71 44 1.71% SMT1/SMT2/SMT3 42 1.63% PMT 39 1.52% HCT 38 1.48% CSE 36 1.4% TRI/TRII 35 1.36% CAD 33 1.28% CODM/T6ODM 32 1.24% LAC 31 1.21% IFR 28 1.09% H6H 26 1.01% CAS 25 0.97% CYP90D1 24 0.93% T16H 23 0.89% FNS 22 0.86% GS 20 0.78% PYKS 19 0.74% TPS 19 0.74% IO 18 0.7% SGD 18 0.7% PAL 18 0.7% SLS 17 0.66% GES 17 0.66% CYP51G1 17 0.66% ANR 16 0.62% NCS 15 0.58% CHS 15 0.58% COMT 14 0.54% CNMT 13 0.51% CCR 13 0.51% CCoAOMT 13 0.51% BR6OX1/CYP85A1 13 0.51% COR 11 0.43% G8O/G8H 11 0.43% LAMT 10 0.39% BBE 10 0.39% 16OMT 9 0.35% DFR 9 0.35% AACT 8 0.31% 8HGO 7 0.27% 7DLH 7 0.27% ADC 7 0.27% F5H/CYP84A 7 0.27% TAT 7 0.27% SQS/FDFT1 7 0.27% CYP719 6 0.23% F3'5'H/CYP75A 6 0.23% ROT3/CYP90C1 6 0.23% SMO1/SMO2 6 0.23% MPO 5 0.19% CHI 5 0.19% CPR 5 0.19% CPD/CYP90A1 5 0.19% GGPPS 5 0.19% MVK 5 0.19% HPPR 4 0.16% DWF1 4 0.16% DET2 4 0.16% FPPS 4 0.16% CYP80B1 3 0.12% TDC 3 0.12% DWF5 3 0.12% HMGR 3 0.12% DXS 3 0.12% MVD 3 0.12% TYDC_DDC 2 0.08% ISY 2 0.08% ANS/LDOX 2 0.08% FK 2 0.08% DWF7 2 0.08% SQE 2 0.08% HYD1 2 0.08% HDR/IspH 2 0.08% MCT/IspD 2 0.08% HMGS 2 0.08% IDI 2 0.08% FLS 1 0.04% CPI1 1 0.04% PMK 1 0.04% CMK/IspE 1 0.04% DXR 1 0.04% MDS/IspF 1 0.04% HDS/IspG 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 304 19 BAHD (141) View species results
Phenylpropanoid pathway 291 11 POD (138) View species results
Alkaloid pathway 241 19 7DLGT (30) View species results
Flavonoid pathway 125 9 UFGT (65) View species results
Rosmarinic acid pathway 105 7 C4H (39) View species results
Steroid pathway 69 12 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 925 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 269 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
typha_angustifolia_xp01357 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
typha_angustifolia_xp04494 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
typha_angustifolia_xp07471 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
typha_angustifolia_xp19955 Steroid DET2 medium pass DET2__00003__sp_Q38944_DET2_ARATH